Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1307 132 1e-25 seq1609 95.1 3e-14 seq1188 91.5 3e-13 >seq1307 Length=69414 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || || || ||||| ||||||||||| |||| | || | ||||| Sbjct 38863 GAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATC 38804 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||||| ||| ||||||||||| | | ||| ||||||| | ||| ||||| || || Sbjct 38803 TTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTATC 38744 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | |||||||| |||||||| ||||| || || Sbjct 38743 TTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATGGT 38684 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| ||||| Sbjct 38683 CTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||||||||| || || |||||||||||||| |||| | ||| | Sbjct 38641 GAGACGGAGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACG 38582 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || || ||||||||||| || | ||| || || | | ||| || || Sbjct 38581 GCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTC 38522 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || || ||||| || || ||| | || | | |||| ||| ||| || || || || Sbjct 38521 TTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGT 38462 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 ||| || ||||| || || ||||| |||| Sbjct 38461 AATGGTCTTGCCAGTCAGGGTCTTGACGA 38433 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||| || ||||||||||| || | | || | |||||| || | Sbjct 39085 CAAG-TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGTGTCCGCCCATCCTCCA 39027 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| || | ||| ||||||| | ||| || ||||| || || | Sbjct 39026 GCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGA 38967 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | |||| ||||||| || ||||| || || || || || | Sbjct 38966 TCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGACTTCCAGTGTGATGGTCTTTC 38907 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || |||||||| |||| ||||||| Sbjct 38906 CGGTCAGGGTCTTCACAAAGATCTGCATT 38878 >seq1609 Length=13884 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 ||||||||||| |||||| || || ||||| || || || || || |||||||| Sbjct 498 TTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 439 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||||| || ||| || ||||| || || || || |||||| | || Sbjct 438 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 379 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| || ||| || || || || || || |||||||| || || || |||||| Sbjct 378 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAAG 319 >seq1188 Length=31586 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || |||||||| |||||| || || ||||| || || || || || |||||||| Sbjct 1359 TTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 1418 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||||| || ||| || ||||| || || || || |||||| | || Sbjct 1419 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 1478 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| || || || || ||||| || || |||||||| || || || |||||| Sbjct 1479 ATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGAAG 1538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153796304023847