Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1307 197 3e-45 seq1188 125 1e-23 seq1609 120 6e-22 >seq1307 Length=69414 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || || ||||||| ||| |||||| |||||||||||||| | Sbjct 38877 CCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAG 38818 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| |||| |||||| ||||| |||||||| || |||||||| || Sbjct 38817 AGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGG 38758 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || ||||| ||||| || || || | ||||| ||||| |||| ||| ||| Sbjct 38757 ATGCCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACT 38698 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 38697 TCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || |||| || | ||||| || || |||||||||||||| | Sbjct 39105 CCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 39046 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| || ||||| || |||||||||| || |||||||| || Sbjct 39045 AGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGG 38986 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| || || || | || || ||||| || | ||||||| Sbjct 38985 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGACT 38926 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || |||| ||||| || || ||||||||| Sbjct 38925 TCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 38878 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || ||||| | ||| ||| ||||||||||||||||| | Sbjct 38649 CCACCACGGAGACGGAGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAG 38590 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || || || || || ||||| ||||| | ||| ||||| || || Sbjct 38589 AGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGG 38530 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||| ||||| || ||||| || ||||| | ||||| |||||||||| || || Sbjct 38529 ATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACC 38470 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092 || || || || ||||| || |||| ||||| |||| || Sbjct 38469 TCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGACTA 38430 >seq1188 Length=31586 Score = 125 bits (138), Expect = 1e-23 Identities = 142/188 (76%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 282904 TGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 |||| | || |||||||| || || |||| || | || ||||| || || || || Sbjct 1351 TGCTAACCTTCTGGATGTTATAATCGCTCAAG-GTCCTCCCGTCCTCGAGCTGCTTGCCC 1409 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 || |||||||| || || ||||| ||| || ||||||||||| |||||||| || || Sbjct 1410 GCGAAGATCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 1469 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || | ||||| ||||| || | |||||| ||||||||||| ||||| ||||||| || Sbjct 1470 ACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTT 1529 Query 283083 TTAACGAA 283090 || ||||| Sbjct 1530 TTGACGAA 1537 >seq1609 Length=13884 Score = 120 bits (132), Expect = 6e-22 Identities = 141/188 (75%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 282904 TGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 |||| | ||||||||||| || || |||| || | || ||||| || || || || Sbjct 506 TGCTAACCTTTTGGATGTTATAATCGCTCAAG-GTCCTCCCGTCCTCGAGCTGCTTGCCC 448 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 || |||||||| || || ||||| ||| || ||||||||||| |||||||| || || Sbjct 447 GCGAAGATCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 388 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || | ||||| ||||| || | ||||| ||||| ||||| ||||| ||||||| || Sbjct 387 ACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTT 328 Query 283083 TTAACGAA 283090 || ||||| Sbjct 327 TTGACGAA 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046716977399678