Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1307 152 4e-32 seq1609 107 1e-18 seq59 84.2 2e-11 >seq1307 Length=69414 Score = 152 bits (168), Expect = 4e-32 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | || ||||| |||||| ||||||||||| ||||||||||| || | Sbjct 39106 TCCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 39047 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 ||| ||| | || |||||||| || || |||||||||| ||||| || || | || Sbjct 39046 CAGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGG 38987 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCC 44287 | ||| ||||| ||| |||||| ||| || ||| |||| ||||| | ||||| Sbjct 38986 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGT--CTATCGTGTCTGACGATTCG 38929 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || |||||||| || ||||||||||| ||||| ||||| Sbjct 38928 ACTTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 38879 Score = 127 bits (140), Expect = 1e-24 Identities = 150/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| ||||||||||||||||| |||| ||| || |||| || Sbjct 38631 ACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCG 38572 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | |||||| ||||| | ||| | ||| || || ||| Sbjct 38571 AGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCCTGA 38512 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | || |||||||||| ||||| |||| Sbjct 38511 ATCTTGGCCTTTACATTGT--CGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTCT 38454 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 | || || |||||||| |||| Sbjct 38453 TGCCAGTCAGGGTCTTGACGA 38433 Score = 102 bits (112), Expect = 6e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | || || || || ||| || || ||||||||||| || Sbjct 38881 CATTCCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTC 38822 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || |||| ||| | || || | || || ||||| |||||||| ||||| || || | Sbjct 38821 GGAGAGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGG 38762 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | ||||| || || |||||| ||| || ||| | || ||||| | ||| Sbjct 38761 GGGGATGCCTTCTTTATCTTGTATCTTGGCCTTGACATTGT--CGATTGTGTCTGAAGAT 38704 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | || || ||||| || || | |||||| ||||||||||||||| Sbjct 38703 TCTACTTCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCATG 38650 >seq1609 Length=13884 Score = 107 bits (118), Expect = 1e-18 Identities = 141/191 (74%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 44142 TGCTCTCCTTTTGGATGTTGTAATCG-GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCG 44200 |||| ||||||||||||| |||||| | || | | | |||| || |||||||| || Sbjct 506 TGCTAACCTTTTGGATGTTATAATCGCTCAAGGT-CCTCCCGTCCTCGAGCTGCTTGCCC 448 Query 44201 GCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT- 44259 || |||||||| |||||||| || | || | || ||||| ||| ||||| ||| Sbjct 447 GCGAAGATCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 388 Query 44260 -CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGG 44318 || ||| | |||||||||| ||| || ||||| | || || ||||| ||||| |||| Sbjct 387 ACATTGT--CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGG 330 Query 44319 TCTTCACGAAG 44329 | || |||||| Sbjct 329 TTTTGACGAAG 319 >seq59 Length=11125 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || |||||||| |||||| |||||||||||| ||||| || | ||| ||| |||| Sbjct 4356 AAGACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGAGAGAGTGCGACCGTCC 4297 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || || ||||||| || ||||| || | || | |||||||| || Sbjct 4296 TCGAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGGGATTCCTTCCTTGTC 4238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359983130106369