Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1307 152 1e-31 seq1609 150 4e-31 seq1188 147 5e-30 seq59 89.7 1e-12 >seq1307 Length=69414 Score = 152 bits (168), Expect = 1e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || || ||||| |||||||| || |||||||||| Sbjct 38433 TCGTCAAGACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCGGACACCATCG 38492 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || ||||||||||||||||| || |||||||| || || || || || | Sbjct 38493 ACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTCTCA 38552 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||||||||| || ||||||||||| || | ||||| |||| || ||| ||||||| | Sbjct 38553 TCTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGG 38612 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || ||||| || Sbjct 38613 AATCCACTCTTCATCTCGT 38631 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | ||||| || || ||||| ||||| || ||| |||||| Sbjct 38654 CAAATCTTCGTCAAGACCTTGACAGGCAAGACCATCACTCTCGAAGTAGAATCTTCAGAC 38713 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| || || |||||||| ||||| |||||||| || Sbjct 38714 ACAATCGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGCATCCCCCCGGACCAACAG 38773 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| ||||| | |||||||| | || || |||| || ||| || Sbjct 38774 CGCTTGATCTTCGCCGGCAAACAATTAGAAGATGGCCGCACACTCTCCGACTACAACATC 38833 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || || ||||| || Sbjct 38834 CAGAAAGAATCCACCCTACATCTCGT 38859 >seq1609 Length=13884 Score = 150 bits (166), Expect = 4e-31 Identities = 143/180 (79%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| ||||| || || || || || |||||||||||||| || ||| ||||||||| Sbjct 320 TTCGTCAAAACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATC 379 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || || ||||| ||||||||||| || | Sbjct 380 GACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTTG 439 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| || || ||||| |||| |||||||||| ||||||| Sbjct 440 ATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGAC-CTTGAGCGATTATAACATCCAAAA 498 >seq1188 Length=31586 Score = 147 bits (162), Expect = 5e-30 Identities = 142/180 (79%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| ||||| || || || || || ||||| |||||||| ||| ||| ||||||||| Sbjct 1537 TTCGTCAAAACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAATCCTCCGACACCATC 1478 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || || ||||| ||||||||||| || | Sbjct 1477 GACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTTG 1418 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| || || ||||| |||| |||||||||| |||| || Sbjct 1417 ATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGAC-CTTGAGCGATTATAACATCCAGAA 1359 >seq59 Length=11125 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||||||||| || ||||||||||| || |||||||| || || |||||||| Sbjct 4238 GACAAGGAAGGAATCCCACCTGACCAGCAACGCCTGATCTTCGCGGGCAAGCAGCTCGAG 4297 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 || || | ||||| | || || || ||||||| || || || || || || || || Sbjct 4298 GACGGTCGCACTCTCTCAGACTACAATATCCAAAAGGAGTCCACGCTCCACCTGGTCTT 4356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203705644410458