Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1307 129 5e-25 seq59 113 4e-20 seq1609 105 6e-18 seq1188 105 6e-18 seq799 82.4 7e-11 >seq1307 Length=69414 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || |||||||||||||| ||||| ||||| || Sbjct 39105 CCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 39046 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| | || || ||||| ||||| || || ||||||||||||||||||| || Sbjct 39045 AGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGG 38986 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | || || | || | | | ||||| ||| || || Sbjct 38985 ATACCCTCCTTGTCC-TGGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGAC 38927 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| || || |||||||| Sbjct 38926 TTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 38879 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| ||||| || ||||| |||||||| Sbjct 38650 GCCACCACGGAGACGGAGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 38591 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| |||||||||||||||||||| || || |||||||| || | || Sbjct 38590 GAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGG 38531 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||| |||||| ||| | || || | || | | | ||||| ||||||| Sbjct 38530 GATACCCTCTTTGTCC-TGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCA 38472 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 |||||| || || || || || ||||| ||||| |||| Sbjct 38471 CCTCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGA 38433 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || ||||| || ||| || ||||| ||||| ||||||||| Sbjct 38877 CCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAG 38818 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | || ||||||||||| |||| |||||||||||||| ||| Sbjct 38817 AGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGG 38758 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || ||| | || | || || | || | | | ||||| || || || Sbjct 38757 ATGC-CTTCTTTATCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTAC 38699 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || |||| ||||| ||||| || |||||| Sbjct 38698 TTCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCATG 38650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || ||| |||||||||||| || |||||| Sbjct 38370 GCCTCCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCT 38311 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| || |||||||| || || || || || |||||||| |||| ||| Sbjct 38310 CAAGGTGCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGG 38251 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 || | ||||||||| ||| || Sbjct 38250 AATTCCTTCCTTGTCCTGGATCTT 38227 >seq59 Length=11125 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| | ||||| ||||| || |||||| |||||| || || || ||||| ||| Sbjct 4371 CCTCCGCGCAAGCGTAAGACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGAG 4312 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| |||||||| || ||||| | || Sbjct 4311 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGGG 4252 Query 41756 ACGCTCTCCTTGTCCATGATTT 41777 | | |||||||| |||||| Sbjct 4251 ATTCCTTCCTTGTCTTTGATTT 4230 >seq1609 Length=13884 Score = 105 bits (116), Expect = 6e-18 Identities = 140/190 (74%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726 |||| |||| || |||||||| ||| | ||| | | |||| |||||||||||||| | Sbjct 506 TGCTAACCTTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCG 447 Query 41727 CGAATATCAGGCGCTGTTGGTCC-GCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT- 41784 |||| |||| |||||| |||||| |||||| | | |||||||||| ||| || ||| Sbjct 446 CGAAGATCAAGCGCTGCTGGTCCGGCGGGATC-CCCTCCTTGTCCTGGATCTTGGCCTTG 388 Query 41785 -CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCG 41843 || | || | |||||| ||||| ||||| | || || || || |||||||| | Sbjct 387 ACATTGTCG--ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGG 330 Query 41844 TCTTTACGAA 41853 | || ||||| Sbjct 329 TTTTGACGAA 320 >seq1188 Length=31586 Score = 105 bits (116), Expect = 6e-18 Identities = 140/190 (74%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726 |||| ||||||| |||||||| ||| | ||| | | |||| |||||||||||||| | Sbjct 1351 TGCTAACCTTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCG 1410 Query 41727 CGAATATCAGGCGCTGTTGGTCC-GCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT- 41784 |||| |||| |||||| |||||| |||||| | | |||||||||| ||| || ||| Sbjct 1411 CGAAGATCAAGCGCTGCTGGTCCGGCGGGATC-CCCTCCTTGTCCTGGATCTTGGCCTTG 1469 Query 41785 -CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCG 41843 || | || | |||||| || || ||||| | || || || || |||||||| | Sbjct 1470 ACATTGTCG--ATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGG 1527 Query 41844 TCTTTACGAA 41853 | || ||||| Sbjct 1528 TTTTGACGAA 1537 >seq799 Length=61627 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 85799 TCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGT 85858 ||| || || |||||||||||||| ||| |||| || |||||| ||||| ||||| Sbjct 40581 TCGGATAGCCCCTCGTTCCGGCCTGGCCTCCAAGAACTTCATCGACACCGGCGCGGGGGT 40522 Query 85859 CATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGAAGAGGA 85918 |||||| || || ||||| || | |||| | | || |||||||| | ||| ||| Sbjct 40521 CATCGATGCGGATTACCGGGGCCAAGTCAAGGTTCTCCTGTTCAACCATGCCGAGACGGA 40462 Query 85919 TCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAAAATCCAC 85973 | | | || | | ||||| | |||||| || || ||| ||||| ||| || Sbjct 40461 TTTTGAAGTCAAGGAGGGAGATAGGGTGGCACAATTGATCATTGAAAGGATCTAC 40407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294424528400