Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4 167 2e-36
seq10 138 1e-27
seq25 122 9e-23
seq1 96.9 4e-15
>seq4
Length=2394644
Score = 167 bits (184), Expect = 2e-36
Identities = 210/285 (74%), Gaps = 5/285 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| |||||||| ||||| |||||||||| |||||| | || |||
Sbjct 143044 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 143103
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| ||| ||| | | || ||||| ||||| | ||||||
Sbjct 143104 TCCAAGGATCTTCACGATTGGAACAACAAGATCAACGACGACGAGAAATACTTCATCTCA 143163
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | ||||||| |||||||| || |||||||||||||||||||| |||||| |
Sbjct 143164 CACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGAGA 143223
Query 116813 TTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| ||| ||||| ||| | | ||||| || |||||||||||||| ||||| ||
Sbjct 143224 TTC-AGCAGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATTATGAT 143282
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
||||||| | |||||||| | || || ||||||||||| ||
Sbjct 143283 GGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACACATA 143327
Score = 140 bits (154), Expect = 3e-28
Identities = 312/462 (68%), Gaps = 5/462 (1%)
Strand=Plus/Plus
Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035
||| | ||||||| || ||||| | || ||||| ||| || || | ||||||
Sbjct 143443 TCAGAAAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGCTC 143502
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
| || || || |||||||| |||||||| || ||||||| || || || |||
Sbjct 143503 AACGTCTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCA 143562
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| || ||| | ||||| || ||||||||||| || || || ||| ||||||||||||||
Sbjct 143563 TCTTCTGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCT 143622
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC 117215
| | ||||||||||| ||| || || |||||| | || ||| || ||| | | |
Sbjct 143623 CGCGAGACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATTCTCTCACTTGAGGAATC 143682
Query 117216 GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275
|||| ||| ||| ||| | || ||||| ||| || ||||| |
Sbjct 143683 GACCAAGCAAACAAGTGGTCCAGGATGTTATCGTTGACGCTGTCAAAATTGAGCAAGAGT 143742
Query 117276 TCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCA 117333
|||| ||||| || ||||| ||| |||| || || | || |||| | |||| |||
Sbjct 143743 TCCTGACCGAGGCTCTGCCATGTG-GTCTTCTTGGCATGAA-CGCGACCCTGATGAAGCA 143800
Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAA 117393
|| ||||||||||| ||||| | || ||| ||| || | | || ||| || ||
Sbjct 143801 GTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAGGTATATAA 143860
Query 117394 CACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTGG 117434
| ||||||| | ||||| ||| | |||||| |||||
Sbjct 143861 GGTGTCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGG 143902
>seq10
Length=1675152
Score = 138 bits (152), Expect = 1e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || ||||| |||| || || | ||
Sbjct 200017 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 200076
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| || |||| ||||| ||||||||||| | |||||
Sbjct 200077 GATACCATCGATAACG-TAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCA 200135
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| |||||||||| ||||||||| ||| |||| |||| || || ||| ||||||||
Sbjct 200136 GCAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAA 200195
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| ||||||||| | || || ||||| ||
Sbjct 200196 CATTCAGAAGGAGTCTACCCTCCATCTCGT 200225
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || ||||| || | || || || | |
Sbjct 200245 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCT 200304
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || |||| || || ||||| ||||| | |||||
Sbjct 200305 GACACAATCGACAACG-TAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACCA 200363
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| ||| || || |||||||| |||| |||||||| | |||||||||
Sbjct 200364 GCAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 200423
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| | ||||| || |||| | || || | ||||||
Sbjct 200424 CATCCAGAAGGAGTCTACGCTCCACTTAGTCCTCCGTCTGCGCGGCGGC 200472
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| || || ||||||||| | || || || | | || | | | |||| |||||
Sbjct 199658 TCACTGGAAAGACCATCACCCTTGAGGTGGAGTCTTCGGATACTATCGACAACG-TCAAG 199716
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| ||||| || ||| | |||||||| || || |||| || |||
Sbjct 199717 TCGAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGC 199776
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880
|| ||||| || || | || |||||| |||||||||||||||||||||
Sbjct 199777 AAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGA 199826
>seq25
Length=449666
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| || ||||| || || |||||| |||| || || | ||
Sbjct 296375 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 296434
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| ||||||||||| | |||||
Sbjct 296435 GACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAA 296494
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | |||| ||| ||||| ||||| || |||| || ||||| || ||||||
Sbjct 296495 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAAC 296554
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| ||||||||| | || |||| || ||| ||||
Sbjct 296555 ATTCAGAAGGAGTCGACTTTGCACCTGGTGCTGCG 296589
>seq1
Length=3506016
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| |||||||| | || ||||| || | |||| |
Sbjct 194564 TTCGTGAAGACTCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 194505
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | | ||| ||||| | || || ||||||||||| ||||||| |||||| |
Sbjct 194504 GACAATGTGAAGTCCAAAATCCAAGATAAGGAGGGCATCCCTCCGGACCAACAACGATTG 194445
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|| | ||| || |||||| |||| || | || || || ||||||||||||||||||
Sbjct 194444 ATTTTCGCCGGAAAACAGTTGGAGGATGGCCGAACTCTTTCTGACTACAACATCCAGAAG 194385
Query 40879 G 40879
|
Sbjct 194384 G 194384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218716982000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |