Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq10 93.3 5e-14
>seq10
Length=1675152
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| || | || || || |||| || | |||||| || |||||
Sbjct 200208 CTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCCAACTGCTTGCCCGCGAA 200149
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
||||||||||||||||| | || | || |||||||| | ||| | || | || |
Sbjct 200148 GATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGT-CTTGAATCTTGGACTTTACGT 200090
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || ||| || || || |||| ||||| || ||||| || || ||||| |
Sbjct 200089 TATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGA 200030
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 200029 CGAAGATCTGCAT 200017
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || ||| || || |||| || |||||||||||||||||
Sbjct 200436 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 200377
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || || |||||||| | || | | |||||| ||| ||| | || | | |||
Sbjct 200376 GATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCC-TGAATCTTGGACTTTACGT 200318
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| ||| || || || | ||| ||||| || || || || ||||| |
Sbjct 200317 TGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGA 200258
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 200257 CGAAGATCTGCAT 200245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817063921000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |