Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq16 111 3e-19
>seq16
Length=1288267
Score = 111 bits (122), Expect = 3e-19
Identities = 593/923 (64%), Gaps = 52/923 (6%)
Strand=Plus/Minus
Query 248832 TTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAAT 248891
||||||||| | |||| ||| || ||||| ||| |||||||||||||||| || |||
Sbjct 165589 TTTCAAAACTTTAGAGAGATCCTACCTCCTTAAACTTGATGGCAAGATCGTTGAGCGACC 165530
Query 248892 TCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGT 248948
||||||||| | ||||| || |||||||| || | || |||| | ||| | ||
Sbjct 165529 CCAGCACATGATCATGCGTGTTGCTGTCGGTAT---CTGGGGAGACAATGTTGAGCGAGT 165473
Query 248949 GCTCGAGACGTACACCGGAATG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCT 249007
| || || |||| | ||| | | | | | ||||||||| | || || ||||
Sbjct 165472 CATTGAAACCTACAACTTGATGTCCAGCAAG-TTTTTCACACATGCCTCGCCAACCCTCT 165414
Query 249008 TCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACG 249067
|||| || || ||| | ||| ||| || ||||| || | | |||| | || |
Sbjct 165413 TCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTAGTCGACATGAAGGATG 165354
Query 249068 ACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCG 249124
|| | || |||||||| ||||| || | |||| || | ||| || || | |
Sbjct 165353 ACAGCATTGAGGGCATTTACGACACCCTCA---AGACCTGTGCAATGATCTCCAAGATGG 165297
Query 249125 CGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTA 249184
| || || || || ||| | || | ||||| || | ||||| |||||| || |
Sbjct 165296 CTGGTGGTATTGGCCTCAACATCCACCGTATCCGTGCCACCGGTTCATACATCGCGGGCA 165237
Query 249185 CAAATGGGGTCAGT---GATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC----C 249237
| ||||| || | | ||| || | ||| | || ||| ||| | ||| |
Sbjct 165236 CCAATGG---CACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTCAATAACACTGCTC 165180
Query 249238 GCCAGGTTCATCAACCAGGC--CGGGCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAG 249295
| | || ||||| ||| | ||||| | || | ||||| || || | ||
Sbjct 165179 GTTATGTGGATCAAGGTGGCAACAAGCGCCCA---GGCGCTTTCGCAATCTACCTTGAGC 165123
Query 249296 TGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCA 249355
||||| || || | || |||||| ||||| | ||||||| | ||||| ||
Sbjct 165122 CTTGGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAG 165063
Query 249356 TGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCA 249415
| | || ||||| |||||| || ||||||| | | || | |||||| || ||
Sbjct 165062 TTCGCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTG 165003
Query 249416 AGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCG-ACGCCCCGGACCTCATCGATCTA 249474
| ||||||||||||| || | | ||| || | | ||||| ||| || ||
Sbjct 165002 AAAAGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGG-CCTGGCTGA-CTG 164945
Query 249475 C-ACGGCGCCGACTTCGACCAAGC-CTATAAGAA----ATACGAATC-CAAC-GGCATCG 249526
| |||| | ||| |||| | || || || ||| || ||| | |||| | ||
Sbjct 164944 CTACGGTGACGAGTTCG---AGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGGGTC- 164889
Query 249527 GCAAGACAATCAAGGCTCGGACCCTT---TTTGCGAAGGTGGTGGAGTCCCAGATAGAGA 249583
||||||| |||||||| | || ||| | ||| | | | ||| |||||| || |
Sbjct 164888 GCAAGACCATCAAGGCACAGAAGCTTTGGTATGCCA---TCCTAGAGGCCCAGACTGAAA 164832
Query 249584 CAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCAT 249642
| || || | | || | | |||||| || ||||| |||||| ||||| | ||
Sbjct 164831 C-CGGAAACCCTTTCATGCTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAAT 164773
Query 249643 CTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAG 249702
||||| ||||||||| || |||||||| | ||| | || | |||| || ||
Sbjct 164772 CTTGGCACCATCCGCAGCTCCAATCTCTGCACGGAGATCATCGAGTACTGCGCCCCCGAT 164713
Query 249703 GAGATTGCCGTCTGCAACCTGGC 249725
||| | |||||||||||| ||||
Sbjct 164712 GAGGTCGCCGTCTGCAACTTGGC 164690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073765368177600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |