Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq25 104 2e-17 seq10 104 2e-17 seq1 96.9 3e-15 >seq25 Length=449666 Score = 104 bits (114), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| || |||||||||||||||||| || || || |||| || Sbjct 296583 ACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTCCTCG 296524 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||||||||| || || | ||||||||||| Sbjct 296523 AGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 296464 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| || ||||| Sbjct 296463 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTC 296404 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 ||||| || || || || ||||| |||||| |||||| Sbjct 296403 CCCGTAAGGGTTTTGACGAAGATCTGCATGATTGCCT 296367 >seq10 Length=1675152 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || ||||| ||||| ||||||||| |||||||||||| |||| |||| |||| ||| Sbjct 200453 ACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 200394 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | || || ||||| || || | ||||||||| ||| | Sbjct 200393 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGA 200334 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| ||| || |||| ||||| ||||| Sbjct 200333 ATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTT 200274 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| || ||||| |||||| Sbjct 200273 CCGGTGAGGGTCTTGACGAAGATCTGCATG 200244 >seq1 Length=3506016 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || || | || |||| |||||||||||||| | Sbjct 194384 CCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAA 194443 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 |||| || |||||||| ||||| | |||||||| || ||||| ||| || Sbjct 194444 TCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGT 194503 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | ||||| ||| ||||||| || || ||||||||||||||||||||||| | Sbjct 194504 CGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGA 194563 Query 45327 A 45327 | Sbjct 194564 A 194564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074838876575