Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq16 358 6e-94 seq4 120 3e-22 seq10 98.7 9e-16 >seq16 Length=1288267 Score = 358 bits (396), Expect = 6e-94 Identities = 1218/1885 (65%), Gaps = 29/1885 (2%) Strand=Plus/Plus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || ||||| |||| || || | || || || || || ||||| Sbjct 163763 TCTTGGTCAACGGTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATT 163822 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||| ||||| | |||||| || ||||| || || | || || | || Sbjct 163823 CCGGTCTTAAGACCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTC 163882 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | ||| | | || || |||||| |||||| || || || || || ||||| Sbjct 163883 GGGTCTTTCATATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCA 163942 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | | | |||||| || |||||||| || |||||||| || |||| Sbjct 163943 GCCATCTGGACAACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATA 164002 Query 22343 TCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 ||| || || | || || | |||||||||| ||||| | ||||| || || Sbjct 164003 TCTGCGGGGAT-GTTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTT 164061 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || | || |||||| || ||| | || ||| || | || | |||| || || Sbjct 164062 CATGGCGTCAGACCACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGAC 164121 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || |||||||| | | ||| | ||||||||| || ||||||||| |||| || || | Sbjct 164122 CTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCA 164181 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 || ||||| |||| ||||| | || ||||| ||||| || || | || || Sbjct 164182 CTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACT 164241 Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATC 22638 ||| | | ||| ||| |||| ||| ||| || ||| | ||||||||| ||||| Sbjct 164242 GTTGCGAATGCCATGCGCCTTGA---TTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATC 164298 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698 ||| ||| ||||||| |||||| || | |||| | ||| || | || ||| Sbjct 164299 GGAAGGCTTCACATT---CCACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGAGCC 164355 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 |||||| || ||| || || | | |||||| || | || | ||| | Sbjct 164356 TTCGTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGC 164415 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGT 22814 | || || ||||| || || | |||||||| || || || ||| ||| Sbjct 164416 ATGGTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGAC----TCGA 164471 Query 22815 ACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874 | |||| || | | |||||| || || | |||||||||||| | ||| || || | Sbjct 164472 AAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCC 164531 Query 22875 GGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTC 22934 || || || | ||| || || | || || | || ||||| | Sbjct 164532 TGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCT 164591 Query 22935 TGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGC 22994 | |||||||||| |||| || || | | ||||| || || Sbjct 164592 TATTCAAGTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGC 164651 Query 22995 CCG-ATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCT 23051 | |||||| | ||||| | ||| | ||| || | ||||| ||||| |||| Sbjct 164652 CTTCATTGTAGTCCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCT 164711 Query 23052 CGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCA 23111 | || || |||||| | || || || || |||||| | || ||||| | Sbjct 164712 CATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAA 164771 Query 23112 AATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCG 23171 ||| |||||||||| || |||||||| | ||| |||||||||||| | || | || | Sbjct 164772 GATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGG 164831 Query 23172 TCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT 23231 | || ||| | ||| | ||| || ||| | |||| || | | ||| || Sbjct 164832 TTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGATG-GTCTTGCGA 164890 Query 23232 ACCTGCCTT--CTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTC 23289 ||| | |||| || ||||||| ||| | || || || ||| ||||||| ||||| Sbjct 164891 CCCTTGTTGAGCTTC-TCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAGCAGTC 164949 Query 23290 GGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTG-AGTCATTTTCAACGC 23348 ||||||||||| ||| | |||||||| ||| |||| || | || |||||||| | Sbjct 164950 AGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCA-ATCGCCGTTCTTTTCAACAC 165008 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 | |||| || ||||| || ||||| || ||| ||| || || || ||||| || || | Sbjct 165009 GCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTT 165068 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | ||||| ||||||| | |||| || || ||||||||||||||||| ||||| | Sbjct 165069 CCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAA 165128 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 |||| | || || ||||| || | ||| ||||| || ||||| || ||||| || |||| Sbjct 165129 GGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGT 165188 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 | ||| | |||| ||||| || | || ||||||||| | ||| |||||| | Sbjct 165189 TATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGT 165248 Query 23589 TCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATA 23648 ||||| | || || | ||| | || || || || || || || || || | Sbjct 165249 ATGAACCGGTGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGA 165308 Query 23649 TCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGA 23708 |||| || || || || |||||||| |||||||| |||||||| || || | ||| Sbjct 165309 TCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGA 165368 Query 23709 CCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768 | | ||| || ||||||| ||| || | || || | || ||| || || || || Sbjct 165369 CTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGG 165428 Query 23769 CGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCT 23828 | || || || | | ||||| | ||||| || || ||| | |||| | | Sbjct 165429 CATGTGTGAAAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGT 165488 Query 23829 CTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGC 23888 |||| ||||||| || || ||||| ||||||| || |||| ||| || | || Sbjct 165489 CTCCCCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGC 165548 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 | | || ||| | || || || | | | ||||| || || ||||| | ||||| | Sbjct 165549 CATCAAGTTTAAGGAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGA 165608 Query 23949 AGTCACGATCGTGCACTATGGCCGA 23973 |||| || || | ||| ||||| || Sbjct 165609 AGTCTCGGTCATACACAATGGCGGA 165633 >seq4 Length=2394644 Score = 120 bits (132), Expect = 3e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| |||||||||||||| ||||| || |||||| | || || ||| || Sbjct 143514 GCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGTTG 143573 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || ||||| ||||| || || || || ||||||| | || ||||| |||||| Sbjct 143574 AAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGAGACGAG 143633 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||||||||||||||||| || || || | | ||||||| Sbjct 143634 GGTCTCCATACTGATTTCGCCTGTCTCCTATTCTCTCAC 143672 >seq10 Length=1675152 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| |||||||| |||| ||||| | ||| Sbjct 200017 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 200076 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||| ||| | || || |||||| Sbjct 200077 GATACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 200136 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| |||||||| ||| | || | || || ||| Sbjct 200137 CAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAAC 200196 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || ||||| || || Sbjct 200197 ATTCAGAAGGAGTCTACCCTCCATCTCGTCCT 200228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765982094000