Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq16 253 3e-62 seq4 104 3e-17 >seq16 Length=1288267 Score = 253 bits (280), Expect = 3e-62 Identities = 1187/1873 (63%), Gaps = 49/1873 (3%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| || ||||| || | || | || ||||| || ||||||||||| || || ||| Sbjct 163775 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 163834 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 ||||| |||| ||| |||||||| || || | ||| | |||| ||| ||| Sbjct 163835 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATA 163894 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 ||||| |||| || ||| ||||| |||||||| || | ||| |||||||| | | Sbjct 163895 TGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGACA 163954 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 | || |||| |||||||| | ||| || || | || |||||| | || | | Sbjct 163955 ACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGATG 164014 Query 62286 TTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 |||| | ||||| | ||| || || | || || | ||||| || | ||| | Sbjct 164015 TTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGAC 164074 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || || | || | | | | ||||| ||||| || || ||||| || ||| Sbjct 164075 CACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCCA 164134 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | | ||||| || ||| ||||| || ||||| || | |||| || || ||| Sbjct 164135 GCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACCC 164194 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 || || || | ||| || || ||||| ||||| || | | ||| || | || || Sbjct 164195 AAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCCA 164254 Query 62523 TATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNN 62582 | | |||||| || || || | |||| | ||||||||| || || ||| Sbjct 164255 TGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATTC 164314 Query 62583 NNNNNNNNATATTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCATA 62638 | | || ||||| || | ||| || | | ||| | ||||| || Sbjct 164315 CACATGTCAAACTGCAGAATGCCTTGAGATACAGGAG----AGCCTTCGTATGTGGAGTA 164370 Query 62639 TGGTCCTTCCTTCTCAGCTAGTT---TACAACTCGCCTCTAATGCACCGTAATAAATGGT 62695 ||| |||| || || || || | | || || | || | | ||||| || Sbjct 164371 TGGGCCTTGCTCCTTGGCAAGCTCCATGGAA---GCAGTGAGAGCGGCATGGTAAATTGT 164427 Query 62696 TTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 ||||| |||| ||| || || ||| |||| || || || || || | ||| | Sbjct 164428 CTCAAATATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGACTCGAAAGGC-AGGCGAAGGG 164486 Query 62756 A-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62814 | ||||| || || | || ||||| || | ||| || || || || | | | || Sbjct 164487 CTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGC 164546 Query 62815 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62874 | | | ||||| |||| || || || || | || || || ||||| | |||| | Sbjct 164547 TGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAA 164606 Query 62875 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC----TATTACA 62930 ||| |||| | ||||| | ||| || | || ||| | | || || || | || Sbjct 164607 CAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCA 164666 Query 62931 AACATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA- 62987 | | | ||| || | || |||| || || ||||| ||||||| | | ||| Sbjct 164667 CAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGC-GCAG 164725 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 || | || ||||| ||||| ||||| | ||| || || | ||| | || || Sbjct 164726 TACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTG 164785 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||||| || || ||||| || || || ||||| || | || |||||| |||| | Sbjct 164786 CTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCC 164845 Query 63108 TCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATA----GAT--TTGT--ATCTC 63158 |||| || || | ||| | | || | ||||| || | || |||| | || Sbjct 164846 TCTAGGATGGCATACCAAA-GCTTCTGTGCCTTGATGGTCTTGCGACCCTTGTTGAGCTT 164904 Query 63159 CT--TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63216 || | || ||||||| |||| | |||||||||| || | | ||| Sbjct 164905 CTCATACT-TTTCGTAGAGAGCCT---------CGAACTCGTCACCGTAGCAGTCAGCCA 164954 Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276 | |||||||| | |||||||||| | ||| || |||| | | || || |||| Sbjct 164955 GGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCA 165014 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 | ||||||||||||||||| || || | || ||||| | || | | ||| || || | Sbjct 165015 TGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGC 165074 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | |||||| || || | |||| | | | || | |||||| || || | ||| | Sbjct 165075 CATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGA 165134 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 | || | | | || || || ||||| || || ||||| | || | ||| |||||||| Sbjct 165135 TTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGA 165194 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 | |||| || ||| ||||| | |||||| || | |||||||| || | ||| || | Sbjct 165195 AGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAAC 165254 Query 63517 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 | ||||||| ||| || || || || || || ||||| || ||||| | || Sbjct 165255 CGGTGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTG 165314 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | || || | ||||| || ||||| || ||||| ||||| |||||| | ||| | Sbjct 165315 CACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGA 165374 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 | || ||||| ||| ||| || |||||||| || | ||| || || || || | Sbjct 165375 AGCATGAAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTG 165434 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 | || | || || | | ||||| || ||||| || || | || | Sbjct 165435 TGAAAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCC 165494 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 || || || || |||||||| | ||||||||| |||| ||||| || ||| | | Sbjct 165495 AGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCAA 165554 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 ||| | | ||||||| | || |||||||| ||||| ||||| | ||| ||||||| Sbjct 165555 GTTTAAGGAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCTC 165614 Query 63877 GTTCGTAAATAAT 63889 | || || | ||| Sbjct 165615 GGTCATACACAAT 165627 >seq4 Length=2394644 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| |||||||| || ||||||||||||| || | ||||| || || ||||| Sbjct 143657 ACAGGCGAAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAG 143598 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||||||||| || | ||| || |||||||| || | ||| ||||| Sbjct 143597 ACCTGGCATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 143538 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 ||| ||||| || ||||| ||||||| ||| Sbjct 143537 GATACCTTCGACGGCAGCGAAGGCAACAAG 143508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817009546000