Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq16 251 9e-62 seq4 98.7 1e-15 >seq16 Length=1288267 Score = 251 bits (278), Expect = 9e-62 Identities = 1189/1874 (63%), Gaps = 35/1874 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||| || ||||| || | || | || ||||| || ||||||||||| || || ||| Sbjct 163775 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 163834 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 ||||| |||| ||| |||||||| || || | ||| | |||| ||| ||| Sbjct 163835 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATA 163894 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 ||||| |||| || ||| ||||| |||||||| || | ||| |||||||| | | Sbjct 163895 TGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGACA 163954 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 | || |||| |||||||| | ||| || || | || |||||| | || | | Sbjct 163955 ACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGATG 164014 Query 65079 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 |||| | ||||| | ||| || || || || || | ||||| || | ||| | Sbjct 164015 TTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGAC 164074 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || || | || | | | | ||||| || || || || || || || ||| Sbjct 164075 CACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCCA 164134 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | | ||||| || ||| ||||| || ||||| || | |||| || || ||| Sbjct 164135 GCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACCC 164194 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 || || || | ||| || || ||||| ||||| || | | ||| || | || || Sbjct 164195 AAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCCA 164254 Query 65316 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 65375 | | |||||| || || || | | |||| | ||||||||| || || || Sbjct 164255 TGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATTC 164314 Query 65376 NNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCGTA 65431 || ||||| || | ||| || | | ||| | ||||| ||| Sbjct 164315 CACATGTCAAACTGCAGAATGCCTTGAGATACAGGAG----AGCCTTCGTATGTGGAGTA 164370 Query 65432 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491 ||| |||| || || || || || || | || | | ||||| || || Sbjct 164371 TGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGTAAATTGTCTC 164430 Query 65492 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGA- 65549 || |||| ||| || || ||| |||| || ||| | || || || | ||| | Sbjct 164431 AAATATCTGCTTGTTCAGCTCTCGTGCCTC-AGGAGACTCGAAAGGC-AGGCGAAGGGCT 164488 Query 65550 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 65609 | ||||| ||||| | || ||||| || | ||| || || || || | | | || | Sbjct 164489 AGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGCTG 164548 Query 65610 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 65669 | | ||||| |||| || || || || | || || || ||||| | |||| ||| Sbjct 164549 TTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAACA 164608 Query 65670 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC-GC--TCATC-TATTACAAA 65725 | |||| | ||||| | ||| || | || ||| | | || |||| || | || | Sbjct 164609 ACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCACA 164668 Query 65726 CATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TA 65782 | | ||| || | || |||| || || ||||| ||||||| | | ||| || Sbjct 164669 AAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGC-GCAGTA 164727 Query 65783 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 65842 | || ||||| ||||| ||||| | |||||| || | ||| | || || || Sbjct 164728 CTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCT 164787 Query 65843 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 65902 ||| || || ||||| || || || ||||| || | || |||||| |||| | || Sbjct 164788 CTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTC 164847 Query 65903 TATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTT-TTCTCTT 65960 || || || | ||| | | || | ||||| || | ||| | ||| || | Sbjct 164848 TAGGATGGCATACCAAA-GCTTCTGTGCCTTGATGGTC---TTGCGACCCTTGTTGAGCT 164903 Query 65961 TCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 66016 || ||| | ||| | | | ||||||||||| || | | ||| || || Sbjct 164904 TCTCATACTTTTCGTAGAGAGCC--TCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGG 164961 Query 66017 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 66076 |||||| | |||||||||| | ||| || |||| | | || || ||||| ||||| Sbjct 164962 ACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAG 165021 Query 66077 ATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 66136 |||||||||||| || || | || | ||| | | | | ||| || || || || Sbjct 165022 ATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTT 165081 Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196 |||| || || | |||| | | | || |||||| || || | ||| || || | Sbjct 165082 CTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAA 165141 Query 66197 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 66256 | | || || || ||||| || || ||||| | || | ||| |||||||| | |||| Sbjct 165142 AGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCG 165201 Query 66257 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC 66316 || ||| ||||| | ||| ||||| || |||||||| || | ||| || || | || Sbjct 165202 CAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGC 165261 Query 66317 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376 ||| ||| || || || || || || ||||| || ||||| | ||| || Sbjct 165262 ACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGT 165321 Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 || | || || || |||||||| || || |||||| |||||| | ||| || || Sbjct 165322 CTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGA 165381 Query 66437 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 ||||| ||| || || |||||||| || | ||| || || || || || || | Sbjct 165382 AGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAA 165441 Query 66497 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 66556 || || | | ||||| || ||||| || || | || | || || Sbjct 165442 CTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCCAGATACC 165501 Query 66557 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 66616 || || |||||||| | ||||||||| |||| |||||||||||| | | ||| | Sbjct 165502 GACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCAAGTTTAAG 165561 Query 66617 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676 | ||||||| | || |||||||| ||||| ||||| | ||| |||||||| || || Sbjct 165562 GAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCTCGGTCATA 165621 Query 66677 AATAATAACCGAGT 66690 | ||| | |||| Sbjct 165622 CACAATGGCGGAGT 165635 >seq4 Length=2394644 Score = 98.7 bits (108), Expect = 1e-15 Identities = 290/442 (66%), Gaps = 4/442 (1%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || ||||| || | || || || ||||| || || || || || | | || || || Sbjct 143947 TTCTGGTAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTC 143888 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 35985 |||||||| ||||| || ||| || ||||| | || | | |||| || | Sbjct 143887 TCCATGAAGTCGAAGGGGTTGGACACCTTATATACCTTCTCGT-TGCCAAGAGCGACCAG 143829 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATT-TCACAATTCATTCCTATAA 36044 | || ||| || || || || ||||| ||||||| || | ||||| || | || Sbjct 143828 GAGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCG-TTCATGCCAAGAA 143770 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | | ||| |||||| | || || || ||||| ||||| ||| ||||| |||| Sbjct 143769 GACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAA 143710 Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 36164 | || || || || ||| ||| | || || || | | ||| |||| Sbjct 143709 CATCCTGGACCACTTGTTTGCTTGGTCGATTCCTCAAGTGAGAGAATAGGAGACAGGCGA 143650 Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224 |||| || ||||||||||||| || | |||||||| || ||||| || |||| Sbjct 143649 AATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCA 143590 Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 36284 | ||||||||||| || | ||| || ||||| ||||| | || ||||| || |||| Sbjct 143589 TGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCTT 143530 Query 36285 CTACTGCCGCAAAGGCAATAAG 36306 | || || || ||||||| ||| Sbjct 143529 CGACGGCAGCGAAGGCAACAAG 143508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172182963000