Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq16 260 2e-64 seq4 100 4e-16 >seq16 Length=1288267 Score = 260 bits (288), Expect = 2e-64 Identities = 1188/1866 (64%), Gaps = 35/1866 (2%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||| ||||| | | || |||| ||||| || |||||||| || || || ||| Sbjct 163775 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 163834 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 ||||| |||| ||| |||||||| || || | ||| |||| | || || || Sbjct 163835 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAG-TCGGGTCTTTCAT 163893 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 || || |||| |||||| ||||| |||||||| || | ||| |||||||| | | Sbjct 163894 ATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGAC 163953 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 | || |||| |||||||| | ||| || || | || |||||| | || | Sbjct 163954 AACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGAT 164013 Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||||| | ||||| | ||| || || ||||| || | || || || | ||| Sbjct 164014 GTTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGA 164073 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| || | || | | | | ||||| ||| || || || || || || || Sbjct 164074 CCACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCC 164133 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 || | ||||| || ||| ||||| || ||||| || | |||| || || || Sbjct 164134 AGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACC 164193 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 ||| || || | ||| || || ||||| ||||| || | ||||| || | || || Sbjct 164194 CAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCC 164253 Query 71277 ATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336 ||| | ||||| || || || ||| |||| | ||||||||| || || || Sbjct 164254 ATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATT 164313 Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTAC-TAGCGTATGATCCTGCATATGTATCGTATG 71395 ||||| | | || | | || ||| | ||||| ||||| Sbjct 164314 CCACATGTCAAACTGCAGAATGCCTTGAGATACAGGA-GAGCCTTCGTATGTGGAGTATG 164372 Query 71396 GTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGA 71455 | |||| | | ||| || || || | || ||| ||||| || || | Sbjct 164373 GGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGTAAATTGTCTCAA 164432 Query 71456 AAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA-ATA 71514 | |||| ||| || || ||| |||| || || || || || | ||| | | Sbjct 164433 ATATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGACTCGAAAGGC-AGGCGAAGGGCTAGG 164491 Query 71515 AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATT 71574 ||||| ||||| | || |||||||| | ||| || || ||||| | | | || | Sbjct 164492 AACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGCTGTTC 164551 Query 71575 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATT 71634 | ||||| |||| || || || || | || || || ||||| | |||| || | Sbjct 164552 TGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAACAACA 164611 Query 71635 ACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC----TATT--ACAAAC 71688 |||| | ||||| | || || | || ||| | | || || || | ||||| Sbjct 164612 ACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCACAAAG 164671 Query 71689 -ACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTG 71747 ||| |||||| | || |||| || || ||||| ||||||| | || || | Sbjct 164672 GACGG-CAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTACTC 164730 Query 71748 TATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 71807 || || || ||||| ||||| | |||||| || | ||| | || || ||||| Sbjct 164731 GATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTCTT 164790 Query 71808 TTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTAT 71867 || || ||||| || || || || || || | || |||||| |||| | |||| Sbjct 164791 GCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCTAG 164850 Query 71868 AATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCT--CTT-T 71923 || || | ||| | | || | ||||| || | |||| | ||| | ||| | Sbjct 164851 GATGGCATACCAAA-GCTTCTGTGCCTTGATGGT---CTTGCGACCCTTGTTGAGCTTCT 164906 Query 71924 CGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGAC 71980 | || | | ||| | | | ||||||||||| || | ||| | | | || |||| Sbjct 164907 CATACTTTTCGTAGAGAGCC--TCGAACTCGTCACCGTA-GCAGTCAGCCAGGCCGGGAC 164963 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAG 72038 |||| || |||||||||| | ||| || || | || ||| || || ||||| ||||| Sbjct 164964 ATTCGTTGGGACACATCAGAGTCCAATCGCCGT--TCTTTTCAACACGCTTCATGAAGAG 165021 Query 72039 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 72098 |||||||||||| || || | || ||||| | | | | || || || || || Sbjct 165022 ATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTT 165081 Query 72099 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 72158 |||| || || | |||| | | | || | |||||| || || | ||| || || | Sbjct 165082 CTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAA 165141 Query 72159 AACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 72218 | | || || || ||||| || || ||||| | || | ||| |||||||| | |||| Sbjct 165142 AGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCG 165201 Query 72219 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 72278 || ||| ||||| | ||| ||||| | |||||||| || | ||| || || |||| Sbjct 165202 CAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGC 165261 Query 72279 ACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 72338 ||| ||| | || || || || || || ||||| || ||||| | ||| || Sbjct 165262 ACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGT 165321 Query 72339 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 || | || || || |||||||| || || |||||| |||||| | ||| || || Sbjct 165322 CTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGA 165381 Query 72399 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 72458 ||||| ||| || || |||||||| || | ||| || || || || || || | Sbjct 165382 AGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAA 165441 Query 72459 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCC 72518 || |||| | ||||| || ||||| || || | || | || || Sbjct 165442 CTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCCAGATACC 165501 Query 72519 TACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 72578 || || |||||||| | ||| ||||| |||| |||||||||||| || | ||| | Sbjct 165502 GACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCAAGTTTAAG 165561 Query 72579 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 | ||||||| | || |||||||| ||||| ||||| | ||| |||||||| || || Sbjct 165562 GAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCTCGGTCATA 165621 Query 72639 AATAAT 72644 | ||| Sbjct 165622 CACAAT 165627 >seq4 Length=2394644 Score = 100 bits (110), Expect = 4e-16 Identities = 293/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || | || || || ||||| || || ||||| || | | || || || Sbjct 143947 TTCTGGTAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTC 143888 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 41892 |||||||| || || || |||| || ||||| | || | | |||| || | Sbjct 143887 TCCATGAAGTCGAAGGGGTTGGACACCTTATATACCTTCTCGT-TGCCAAGAGCGACCAG 143829 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATT-TCACAATTCATTCCTATAA 41951 | || ||| || | ||| || ||||| ||||||| || | ||||| || | || Sbjct 143828 GAGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCG-TTCATGCCAAGAA 143770 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | | ||| |||||| | || || || ||||| ||||| ||| ||||| |||| Sbjct 143769 GACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAA 143710 Query 42012 TAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 | || | || || || || ||| ||| | || || || | | ||| || Sbjct 143709 CA--TCCTGGACCACTTGTTTGCTTGGTCGATTCCTCAAGTGAGAGAATAGGAGACAGGC 143652 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 |||||| || |||||||| |||| || | |||||||| || ||||| || || Sbjct 143651 GAAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGG 143592 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||| ||||||||||| || | ||| || || || ||||| | || |||||||| || Sbjct 143591 CATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACC 143532 Query 42190 TTCTACTGCCGCAAAGGCAATAAG 42213 ||| || || || ||||||| ||| Sbjct 143531 TTCGACGGCAGCGAAGGCAACAAG 143508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138570807000