Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 141 1e-28 seq16 114 2e-20 >seq4 Length=2394644 Score = 141 bits (156), Expect = 1e-28 Identities = 206/283 (73%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| | || ||||| ||||| | || ||| | |||||| Sbjct 143044 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 143103 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||||||| | || | | || || ||| | | || || || Sbjct 143104 TCCAAGGATCTTCACGATTGGAACAACAAGATCAAC-GACGACGAGAAATACTTCATCTC 143162 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||||||||||||||||| |||| || ||||| ||||||||||| ||||| || || | Sbjct 143163 ACACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGA- 143221 Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 ||||| ||| | || || |||| ||| ||||| ||||| ||||| || ||| Sbjct 143222 GATTCAGCAGCGAGGTCCAGATCCCTGAGG-CTCGCTGCTTCTACGGCTTCCAGATTATG 143280 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298 || |||||| | |||||||| | |||||| || || |||| Sbjct 143281 ATGGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACA 143323 Score = 100 bits (110), Expect = 4e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || |||||| | |||| ||||| ||||| ||| | |||||| | | ||| | | Sbjct 143448 AAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGCTCAACGT 143507 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || ||||| ||||| || || |||||||| ||| ||||| ||||||| Sbjct 143508 CTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 143567 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | |||||||| || |||||||| || || || | |||||| | || || ||| Sbjct 143568 TGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGA 143627 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 |||||||| || || ||| || ||| ||| || || Sbjct 143628 GACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATT 143665 >seq16 Length=1288267 Score = 114 bits (126), Expect = 2e-20 Identities = 300/451 (67%), Gaps = 14/451 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || ||||| || || ||||||||| | || ||||| | || |||||||| |||||| Sbjct 165168 CAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATCTACCTTGAGCCTTGGCATGCGGAC 165109 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || || || | || || ||| |||| ||||| | || || | || Sbjct 165108 GTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTTCGCGCACGTGAT 165049 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || ||| | || ||| | ||||||||||| || | | ||| | Sbjct 165048 CTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGAAAAGAACGGCGAT 164989 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||| ||| || | ||||| ||| | || |||| || || ||||| Sbjct 164988 TGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTGCTACGGTGACGAGTTC 164929 Query 97116 GAGGCCAAGTACACGGCCTACGAG-----CAAGAGGGCCGATACGTGAGACGAGTCGATG 97170 ||||| ||| || ||| ||| | || || |||| | || | | Sbjct 164928 GAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGG----GTCGCAAGACCA-TCAAGG 164874 Query 97171 CACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 ||| |||| || ||| | |||||| | ||| ||| || || |||| || | ||| Sbjct 164873 CAC-AGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGGAAACCCTTTCATG 164815 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGG 97288 |||||||| ||| | |||||||| |||||||| | | ||| ||||||||| | Sbjct 164814 CTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTT-GGCACCATCCGCAG 164756 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||||| |||||||| || | |||||| Sbjct 164755 CTCCAATCTCTGCACGGAGATCATCGAGTAC 164725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058505257000