Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq4 141 1e-28
seq16 114 2e-20
>seq4
Length=2394644
Score = 141 bits (156), Expect = 1e-28
Identities = 206/283 (73%), Gaps = 6/283 (2%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| ||||| | || ||||| ||||| | || ||| | ||||||
Sbjct 143044 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 143103
Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
|||||||| || |||||||| | || | | || || ||| | | || || ||
Sbjct 143104 TCCAAGGATCTTCACGATTGGAACAACAAGATCAAC-GACGACGAGAAATACTTCATCTC 143162
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196
||||||||||||||||| |||| || ||||| ||||||||||| ||||| || || |
Sbjct 143163 ACACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGA- 143221
Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255
||||| ||| | || || |||| ||| ||||| ||||| ||||| || |||
Sbjct 143222 GATTCAGCAGCGAGGTCCAGATCCCTGAGG-CTCGCTGCTTCTACGGCTTCCAGATTATG 143280
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298
|| |||||| | |||||||| | |||||| || || ||||
Sbjct 143281 ATGGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACA 143323
Score = 100 bits (110), Expect = 4e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426
|| |||||| | |||| ||||| ||||| ||| | |||||| | | ||| | |
Sbjct 143448 AAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGCTCAACGT 143507
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
|| || || ||||| ||||| || || |||||||| ||| ||||| |||||||
Sbjct 143508 CTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 143567
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
||| | |||||||| || |||||||| || || || | |||||| | || || |||
Sbjct 143568 TGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGA 143627
Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584
|||||||| || || ||| || ||| ||| || ||
Sbjct 143628 GACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATT 143665
>seq16
Length=1288267
Score = 114 bits (126), Expect = 2e-20
Identities = 300/451 (67%), Gaps = 14/451 (3%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
|| || ||||| || || ||||||||| | || ||||| | || |||||||| ||||||
Sbjct 165168 CAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATCTACCTTGAGCCTTGGCATGCGGAC 165109
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || || || | || || ||| |||| ||||| | || || | ||
Sbjct 165108 GTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTTCGCGCACGTGAT 165049
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || || ||| | || ||| | ||||||||||| || | | ||| |
Sbjct 165048 CTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGAAAAGAACGGCGAT 164989
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||| ||| || | ||||| ||| | || |||| || || |||||
Sbjct 164988 TGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTGCTACGGTGACGAGTTC 164929
Query 97116 GAGGCCAAGTACACGGCCTACGAG-----CAAGAGGGCCGATACGTGAGACGAGTCGATG 97170
||||| ||| || ||| ||| | || || |||| | || | |
Sbjct 164928 GAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGG----GTCGCAAGACCA-TCAAGG 164874
Query 97171 CACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229
||| |||| || ||| | |||||| | ||| ||| || || |||| || | |||
Sbjct 164873 CAC-AGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGGAAACCCTTTCATG 164815
Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGG 97288
|||||||| ||| | |||||||| |||||||| | | ||| ||||||||| |
Sbjct 164814 CTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTT-GGCACCATCCGCAG 164756
Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
||||||||| |||||||| || | ||||||
Sbjct 164755 CTCCAATCTCTGCACGGAGATCATCGAGTAC 164725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058505257000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |