Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq25 109 5e-19 seq10 102 7e-17 seq14 84.2 2e-11 >seq25 Length=449666 Score = 109 bits (120), Expect = 5e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | |||| ||||| ||||||||| || ||||| || | ||| ||||| Sbjct 296601 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAG-- 296544 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| ||| | ||||| ||||| || ||| | ||||| |||| || || ||||| | Sbjct 296543 ATAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCG 296484 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || || || ||||| | || || | |||||| | ||| ||||| | || | Sbjct 296483 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCA 296424 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | || | ||||| || || || ||||| ||||| || |||||||||||| || Sbjct 296423 CCTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATGATT 296371 >seq10 Length=1675152 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || ||||| | ||||| ||||| || | ||| || ||||||| ||| || ||| Sbjct 200453 ACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 200394 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | |||||| ||||| || ||||| || || || | | Sbjct 200393 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGA 200334 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| ||| | ||| ||||||| || || || | ||| ||||| ||| Sbjct 200333 ATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTT 200274 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 200273 CCGGTGAGGGTCTTGACGAAGATCTGCATGC 200243 >seq14 Length=1339294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| ||||| ||||||| | || |||||| ||||| ||||||||||| || Sbjct 355033 ATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACCTTCCTT 355092 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC-GTCAATCGTGA 94970 ||| | |||||| |||||| | ||| ||||| | ||| ||| |||| || | Sbjct 355093 GTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTG-ATGGGTGACACTCAAGAGTTA 355151 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 | || || || || ||| |||||||| || ||| Sbjct 355152 TTGTCTTGCCGGTCTTAGTCTTCACAAATATTTGC 355186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290779727000