Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10 102 7e-17 seq25 84.2 2e-11 >seq10 Length=1675152 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || |||| || | ||||| ||||||||| Sbjct 200245 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCT 200304 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| || || || || || ||||| ||||| Sbjct 200305 GACACAATCGACAACGTAAAGTCCAAGATTCA-GGATAAGGAGGGTATCCCACCAGACCA 200363 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||| || || || || || | ||||| | |||||| || |||| ||||| Sbjct 200364 GCAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 200423 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || ||||| || Sbjct 200424 CATCCAGAAGGAGTCTACGCTCCACTTAGTCCT 200456 >seq25 Length=449666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || | ||||| |||| |||||||| || Sbjct 296375 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 296434 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || || || || |||| Sbjct 296435 GACACCATCGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACC 296492 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || |||||||| || | || || | || || | ||||||| Sbjct 296493 AACAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACA 296552 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||| || || || || | || | ||||| | ||| ||||||| Sbjct 296553 ACATTCAGAAGGAGTCGACTTTGCACCTGGTGCTGCGTCTACGAGGAGG 296601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327603911125