Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq25 107 2e-18 seq10 107 2e-18 seq14 96.9 3e-15 >seq25 Length=449666 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || |||| || || ||||| | || Sbjct 296375 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 296434 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || |||||||||||||| || || || || ||| Sbjct 296435 GACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAA 296494 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| ||| ||| | || ||||||||| Sbjct 296495 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAAC 296554 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 296555 ATTCAGAAGGAGTCGAC 296571 >seq10 Length=1675152 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| ||||||| || || || | || Sbjct 200017 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 200076 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || ||||||||||||||||| || ||||| || || Sbjct 200077 GATACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 200136 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||||| ||||| || || |||| || |||||| Sbjct 200137 CAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAAC 200196 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || || || ||| | ||| Sbjct 200197 ATTCAGAAGGAGTCTACCCTCCAT 200220 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| ||||| | | ||||| | ||| | |||| Sbjct 199660 ACTGGAAAGACCATCACCCTTGAGGTGGAGTCTTCGGATACTATCGACAACGTCAAGTCG 199719 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || || || ||||| ||||| Sbjct 199720 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGCAAG 199779 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||| | |||||| ||| ||| ||||||| |||||||| || || || Sbjct 199780 CAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGA 199826 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || ||||||||||| ||||| || || ||||||||||| || || || || Sbjct 200329 AAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAACGTCTTATCTTCGCTGGTAAG 200388 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || |||||| | ||| |||||||| || || || || || | || Sbjct 200389 CAGCTGGAAGACGGTCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCTACGCTCCAC 200448 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 ||||| | || ||||||| || Sbjct 200449 TTAGTCCTCCGTCTGCGCGGCGG 200471 >seq14 Length=1339294 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC-G 22279 |||||| ||||| || ||| ||||| || || | |||||||| ||| | ||| | | Sbjct 355186 GCAAATATTTGTGAAGACTAAGACCGGCAAGACAATAACTCTTGA-GTGTCACCCATCAG 355128 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | || | ||| || |||| ||||||||||||||||| ||||||||||| || || | Sbjct 355127 ACACGATCGACAATGTCAAGAGTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAGC 355068 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 |||| || || ||||| || || ||||| || ||| Sbjct 355067 AACGACTGATCTTTGCAGGAAAGCAGTTGGAAGAT 355033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727616342375