Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq25 107 2e-18
seq10 107 2e-18
seq14 96.9 3e-15
>seq25
Length=449666
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || ||||| | || || || || |||| || || ||||| | ||
Sbjct 296375 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 296434
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || |||||||||||||| || || || || |||
Sbjct 296435 GACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAA 296494
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || |||||||| ||| | ||||| ||| ||| | || |||||||||
Sbjct 296495 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAAC 296554
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 296555 ATTCAGAAGGAGTCGAC 296571
>seq10
Length=1675152
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || ||| ||||||| || || || | ||
Sbjct 200017 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 200076
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | || || ||||||||||||||||| || ||||| || ||
Sbjct 200077 GATACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 200136
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| ||||| ||||| || || |||| || ||||||
Sbjct 200137 CAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAAC 200196
Query 22399 ATTCAAAAAGAATCCACCATACAT 22422
||||| || || || ||| | |||
Sbjct 200197 ATTCAGAAGGAGTCTACCCTCCAT 200220
Score = 95.1 bits (104), Expect = 1e-14
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| ||||| | | ||||| | ||| | ||||
Sbjct 199660 ACTGGAAAGACCATCACCCTTGAGGTGGAGTCTTCGGATACTATCGACAACGTCAAGTCG 199719
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || || || || || || ||||| |||||
Sbjct 199720 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGCAAG 199779
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409
||| | |||||| ||| ||| ||||||| |||||||| || || ||
Sbjct 199780 CAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGA 199826
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| || ||||||||||| ||||| || || ||||||||||| || || || ||
Sbjct 200329 AAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAACGTCTTATCTTCGCTGGTAAG 200388
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | || || |||||| | ||| |||||||| || || || || || | ||
Sbjct 200389 CAGCTGGAAGACGGTCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCTACGCTCCAC 200448
Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445
||||| | || ||||||| ||
Sbjct 200449 TTAGTCCTCCGTCTGCGCGGCGG 200471
>seq14
Length=1339294
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/155 (75%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC-G 22279
|||||| ||||| || ||| ||||| || || | |||||||| ||| | ||| | |
Sbjct 355186 GCAAATATTTGTGAAGACTAAGACCGGCAAGACAATAACTCTTGA-GTGTCACCCATCAG 355128
Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339
| || | ||| || |||| ||||||||||||||||| ||||||||||| || || |
Sbjct 355127 ACACGATCGACAATGTCAAGAGTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAGC 355068
Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374
|||| || || ||||| || || ||||| || |||
Sbjct 355067 AACGACTGATCTTTGCAGGAAAGCAGTTGGAAGAT 355033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727616342375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |