Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq16 266 6e-66 seq4 158 2e-33 >seq16 Length=1288267 Score = 266 bits (294), Expect = 6e-66 Identities = 1094/1703 (64%), Gaps = 69/1703 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| ||| || | || || | || | ||||||||||| |||||||| Sbjct 163772 ACGGTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTA 163831 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || |||| || || |||||| || | ||| ||| || | ||| Sbjct 163832 AGACCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCAT----AG--TCGGG 163885 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 || | | | | || ||| | |||||| ||| || | ||||| | || || Sbjct 163886 TCTTTC------ATATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCG 163939 Query 243917 GCGGCCAT--GGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 || ||||| || | || | | |||||| || || || |||||||||| || | Sbjct 163940 GCAGCCATCTGGACAACAGTACGCTGTGAGATTTCCCAGACA--GTCTTGTAGAGGGCTT 163997 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 ||| | |||||| | |||||||| || ||||| || | | |||| || Sbjct 163998 TGATATCTGCGGGGATGTTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGT 164057 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCT---GT 244091 | |||| || ||||| ||||| | |||| ||| | || ||| || Sbjct 164058 TCTTCATGGCGTCAGACCACAAGCCCATGTCAACCAGATCCTTTA---GGAGCCAAGGGT 164114 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 | || ||||| ||||| || | || || | ||| ||||||| ||| || ||||| Sbjct 164115 TGACGACCTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCT 164174 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 | | || ||| |||| |||| ||||| | || || || || ||||| || | || | Sbjct 164175 CAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTA 164234 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACA 244271 |||||||||| | | ||| ||| || ||| | | ||| ||||||||| | Sbjct 164235 GCAGACTGTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAA 164294 Query 244272 TGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGA 244331 | || ||| | || | || |||||||||||||||||| | || | | Sbjct 164295 GATCGGA-AGG-CTTCACATT-------CCACATGTCAAACTGCAGAATGCCTTGAGATA 164345 Query 244332 CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGT 244391 | || ||| ||||| || | ||| || || | || ||| |||| | | Sbjct 164346 CAGGAGAGCCTTCGTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAG 164405 Query 244392 CGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGC 244451 ||| ||||| | ||| || ||||| || ||| |||||||| || || |||| | | Sbjct 164406 TGAGAGCGGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCCT--CAGG 164463 Query 244452 AGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCC 244509 || ||| || | || | | ||| | || || || ||||| ||||||| || Sbjct 164464 AGACTCGAAAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACC 164523 Query 244510 GATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569 ||||| ||||| ||| ||||| | | ||||| || |||||||| ||||| |||| Sbjct 164524 AATGGGCCTGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTC 164583 Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCA-TGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 ||| | ||| || | ||| || | | | ||| || ||| |||| || |||| Sbjct 164584 GATGATCTTATTCAAGTTTCGAACAACAACTTCGGTA-ACATCGTGCAGCTTTTGGAAGT 164642 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688 | || | | ||| || || ||| || || || ||| | || | Sbjct 164643 CATA-------GCAGCCTTC---ATTGTAGTCCACA-AAGGACGGCAAGGCCAGCGAAG- 164690 Query 244689 CCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGT 244748 ||| |||||||||||| ||||| || | | | ||||| || ||||| |||||||| | Sbjct 164691 CCAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGAT 164750 Query 244749 TACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808 | || ||||||||| || | || || ||| |||| ||||| || || |||| Sbjct 164751 TGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGT 164810 Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCC 244868 |||||||||| || ||||| || |||||| | |||| | | ||| || | | Sbjct 164811 AGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCT 164870 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC--CTCGTAGCGGGTGTACAGGGCCTC 244926 ||||||| ||| ||||| ||||| | || ||| || ||| || ||||| Sbjct 164871 GTGCCTTGATGGTCTTGCGACCCTTG--TTGAGCTTCTCATACTTTTCGTAGAGAGCCTC 164928 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCC 244985 ||||||| || || || | |||||||| || || ||| ||||| ||| ||| Sbjct 164929 GAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGACA-TTCGTTGGGACACATCAGAGTCC 164987 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | |||||| | | || | || ||||||||| || || ||||| ||||| |||||| Sbjct 164988 AATCGCCGTTCTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGA 165047 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | | | || ||| |||| |||||| | || |||| || || || | Sbjct 165048 GATCACGTGCGCGAACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACA 165107 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| | ||||| ||||| | ||||| |||| ||||| || ||||||||||| || | Sbjct 165108 CGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTT 165167 Query 245166 GGTCCACCATCCTCTCGAGC-GCG---TTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 | |||| | | ||||| | | ||||||| ||||| | || | | ||||| Sbjct 165168 GATCCA----CATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTG 165223 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGGAC 245278 || ||| ||||||||| |||||| | || || | | || ||| | || || Sbjct 165224 GAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTG--- 165280 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | ||| | || || || ||||||||| | || ||| |||||| |||||| ||| Sbjct 165281 AGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATG 165340 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 ||||| |||||||| |||||||| || || ||||| || ||||| || | || ||| Sbjct 165341 CCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGG 165400 Query 245399 CTGCACGAGTTGAACAGAGTGGG 245421 ||| || ||||| || || || Sbjct 165401 GTGCCCGCATTGAAGAGGGTTGG 165423 >seq4 Length=2394644 Score = 158 bits (174), Expect = 2e-33 Identities = 311/446 (70%), Gaps = 13/446 (3%) Strand=Plus/Plus Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 || || ||||| | |||||||| || ||||||||| || ||||| || ||||||||| Sbjct 143508 CTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 143567 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||| | ||| || || || ||||| || ||||| ||||| ||||| |||||| | Sbjct 143568 TGGTTGAAGAAGCGTGGCCTC-ATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCG 143626 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-CA 42882 |||||||| || |||| || || ||||| ||||| ||||| ||| | ||| | | Sbjct 143627 AGACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATTCTC---TCACTTGAGGAATCG 143683 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 | | | || || ||||| || | ||| || || || | || ||| | |||| Sbjct 143684 ACCAAGCAAACAAG-TGGTCCAGGATGTTATCGTTGACGCTGTCAAAATTGAGCAAGAGT 143742 Query 42943 TCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGA-CCTCATGTGCAA 43000 |||| || || | ||||| ||| || | |||||||| | ||| ||| ||| | Sbjct 143743 TCCTGACCGAGGCTCTGCCATGTG-GTCTTCTTGGCATGAA-CGCGACCCTGATGAAGCA 143800 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACA 43059 ||| ||| ||| ||| ||||| | ||||| || | ||| || | | || | Sbjct 143801 GTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAG-GTATATA 143859 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 | | | |||||||||||| |||||||||||||| | | |||||||||||||| | Sbjct 143860 AGGTGTCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGCGGCAAGACCAACTTCT 143919 Query 43120 TCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||| |||||||| |||||| Sbjct 143920 TCGAGAAGCGAGTCGCCGATTACCAG 143945 Score = 127 bits (140), Expect = 4e-24 Identities = 179/249 (72%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| | ||| ||||||||| ||||||||||| ||| ||||||| Sbjct 143053 ATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTGTCCAAGGAT 143112 Query 42369 ACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAAAACATACTG 42425 || ||| | || || || |||| || | ||| || | |||| || Sbjct 143113 CTTCACGATTGGAACAACAAGATCAACGACGACGAGAAATACTTCATCTCACACATTTTG 143172 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 |||||||||||||| ||||| ||||| ||||| ||||| || | | || |||| | Sbjct 143173 GCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGAGATTCAGCAGC 143232 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||| ||| | |||||| ||||||||||||||||||||||| || |||||| | Sbjct 143233 GAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATTATGATGGAGAACATC 143292 Query 42546 CACTCTGAG 42554 ||||| ||| Sbjct 143293 CACTCGGAG 143301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338314682000