Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 4e-12 seq17 86.0 1e-11 >seq4 Length=2394644 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 243543 CGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGA 243602 ||| ||| | ||||| | ||| ||||||||||| | || ||| ||||| ||||| Sbjct 143750 CGAGGCTCTGCCATGTGGTCTTCTTGGCATGAACGCGACCCTGATGAAGCAGTATATCGA 143809 Query 243603 ATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAA---CTCCAA 243659 ||||| ||||| || | | |||| ||||| | ||||| || || || ||| Sbjct 143810 GTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAGGTATATAAGGTGTCC-- 143867 Query 243660 GAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAA 243719 |||||||| | ||| |||||| ||| || ||| || || || ||||||||||| || Sbjct 143868 -AACCCCTTCGACTTCATGGAGAACATCTCTCTTGGCGGCAAGACCAACTTCTTCGAGAA 143926 Query 243720 GCGTGTCAGTGATTATCA 243737 ||| ||| ||||| || Sbjct 143927 GCGAGTCGCCGATTACCA 143944 >seq17 Length=1260663 Score = 86.0 bits (94), Expect = 1e-11 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 333761 CAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGA 333820 |||||| ||| |||||||| || |||| |||| || ||||||||| || || Sbjct 332180 CAGCTTCTTGTTCGGTTCGTAGTGATAAATATCGGTGGTGACGTTGTCGAGGAATCCAGA 332239 Query 333821 GTCGTGTGACACAATCACGCACGAAACGTC--CTTAAGGTTGATCAGGTATTCAATCAGC 333878 |||||| |||||||||| || | | ||| | | | || | || || || |||| Sbjct 332240 GTCGTGAGACACAATCAAGCTGGTGATGTCGACGTGGGATT--TGAGATAGTCCTCCAGC 332297 Query 333879 CACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCG 333938 ||| | | ||| | ||| | ||| ||||| || ||||| |||||||| | | || Sbjct 332298 CACTTGATGTTGGCGACATCCAAATGATTGGTAGGTTCGTCGAGAAGTAGCACATCAGCT 332357 Query 333939 TTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 || ||||| ||||| || ||||| | ||||||||||| || || || || Sbjct 332358 CTCTTAAGCATAGCACGGGCGAGAGCCAACTTCATTTTCCATCCACCAGAGAG 332410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878940201250