Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq16 215 5e-51 >seq16 Length=1288267 Score = 215 bits (238), Expect = 5e-51 Identities = 342/486 (70%), Gaps = 6/486 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || ||||| ||||| ||||| ||||| | | || ||||||| || ||||| Sbjct 165429 GCCTCGCCAACCCTCTTCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTA 165370 Query 93952 AT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | ||| | |||| ||| ||| || |||| ||||| ||||||| |||||| | Sbjct 165369 GTCGAC-ATGAAGGATGACAGCATTGAGGGCATTTACGACACCCTCAAGACCTGTGCAAT 165311 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGT 94068 ||||| || || || || || || ||| ||||| |||| ||||||| ||| Sbjct 165310 GATCTCCAAGATGGCTGGTGGTATTGGCCTCAACATCCAC--CGTATCCGTGCCACCGGT 165253 Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128 || |||||| || ||||||||||| |||||||| || | || ||||| || |||||| Sbjct 165252 TCATACATCGCGGGCACCAATGGCACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTC 165193 Query 94129 AACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188 || ||| | || || || ||||| || ||||| | | | || ||||||| || Sbjct 165192 AATAACACTGCTCGTTATGTGGATCAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATC 165133 Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGC 94248 || || ||||| ||||| ||||||||| | ||||| ||||| ||||||||||| ||| Sbjct 165132 TACCTTGAGCCTTGGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGC 165073 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || | | || | || |||||| ||| || ||| | || || || || ||| Sbjct 165072 AAGGAAGAAGTTCGCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATG 165013 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || || || || ||| || |||| ||| | |||||||| ||||||||||| ||| Sbjct 165012 AAGCGTGTTGAAAAGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTG 164953 Query 94369 TCCGAC 94374 | ||| Sbjct 164952 GCTGAC 164947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722736197000