Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25 102 8e-17 seq10 102 8e-17 >seq25 Length=449666 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||||| || | || | | |||||||| ||||||||||| || Sbjct 296602 GCCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGA 296543 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||||||| || || |||| |||| | ||||||||||| || || Sbjct 296542 TAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGG 296483 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| || || | ||||| | | |||||||| ||||||| Sbjct 296482 GATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGAAGACTCCA 296424 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | || || || || || ||||| || || ||||||||| Sbjct 296423 CCTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATG 296374 >seq10 Length=1675152 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||| | ||||| || | | |||||||| || |||||||||||||| Sbjct 200472 GCCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 200413 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || || || ||||| | |||| ||||| || ||||| || || Sbjct 200412 CAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGG 200353 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| | || | |||| | || | ||||| | |||||| | Sbjct 200352 GATACCCTCCTTATC-CTGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTA 200294 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | ||| | || || || || || || || || || ||||||||| Sbjct 200293 CTTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCATG 200244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261934754000