Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq25 114 1e-20 seq10 89.7 5e-13 seq1 82.4 7e-11 >seq25 Length=449666 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || || |||| |||| ||||| || | || ||||| || ||||| |||||||| Sbjct 296604 GCGCCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCA 296545 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || || || ||||| || || ||| ||||||||||||| || || || Sbjct 296544 GATAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGC 296485 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || |||||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 296484 GGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 296425 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| | || || || || || ||||| || || ||||||||| Sbjct 296424 ACCTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATG 296374 >seq10 Length=1675152 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| || | ||| ||| || || | ||| || || Sbjct 200213 GTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCCAACTGCTTGCCC 200154 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||| || || || |||||||||||||| || || ||| Sbjct 200153 GCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTGGACTTT 200094 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | ||| || |||| || | ||| |||||||| || || Sbjct 200093 ACGTTATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTC 200034 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 200033 TTGACGAAGATCTGCAT 200017 >seq1 Length=3506016 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || | ||||||||| ||| | |||||||| || || || ||||| ||||||||||| Sbjct 194418 ATCCTCCAACTGTTTTCCGGCGAAAATCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTT 194477 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || |||||| ||| | | |||| ||||||| |||||| || | || | Sbjct 194478 ATCTTGGATTTTGGACTTCACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGAT 194537 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| |||||||| || || ||| Sbjct 194538 GGTCTTGCCCGTCAGAGTCTTCACGAAA 194565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500354218000