Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq25 95.1 1e-14 seq14 84.2 2e-11 seq10 84.2 2e-11 >seq1 Length=3506016 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| |||||||| ||| | ||||||||||| |||||||| || ||||| || || Sbjct 194418 ATCCTCCAACTGTTTTCCGGCGAAAATCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTT 194477 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||| ||||| || | || | ||||| || |||||||| || | ||| | Sbjct 194478 ATCTTGGATTTTGGACTTCACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGAT 194537 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAA 45332 || ||||| || ||||| || || ||| Sbjct 194538 GGTCTTGCCCGTCAGAGTCTTCACGAAA 194565 >seq25 Length=449666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | || ||| || |||| || || ||||| || || || ||||| Sbjct 296601 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGAT 296542 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || || | || || || ||| | |||||||| || ||||| ||||| Sbjct 296541 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGG 296482 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || ||||| || || |||| || | ||||||||||||||| || Sbjct 296481 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 296422 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || || || || || ||||| || || || ||||| Sbjct 296421 TCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 296375 >seq14 Length=1339294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || |||||||| | |||| |||||||||||| || ||||| ||||| || Sbjct 355033 ATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACCTTCCTT 355092 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC-TTCGAGAGTAA 45303 ||||||||||| |||| || | ||||| || | | ||| || ||||| | Sbjct 355093 GTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTGATGGGT-GACACTCAAGAGTTA 355151 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 || |||||||| ||| || ||||| |||||| Sbjct 355152 TTGTCTTGCCGGTCTTAGTCTTCACAAATATTTGC 355186 >seq10 Length=1675152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | |||| || ||||| || ||||| ||||| || || ||||| Sbjct 200471 CCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 200412 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || |||| || || || ||| | || | ||||||||||| || || Sbjct 200411 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 200352 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || ||||| ||||| || || | || | || | ||||| || ||||| || Sbjct 200351 ATACCCTCCTTATCCTGAATCTTGGACTTTA-CGTTGTCGATTGTGTCAGACGACTCTAC 200293 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| | |||| || || ||||| || || || || || || ||||| Sbjct 200292 TTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 200245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002776247000