Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq16 167 3e-36 seq4 105 8e-18 >seq16 Length=1288267 Score = 167 bits (184), Expect = 3e-36 Identities = 1167/1860 (63%), Gaps = 65/1860 (3%) Strand=Plus/Plus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578 |||| | ||||||| ||||| ||| || | | |||||||||||||| || ||| Sbjct 163769 TCAACGGTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTC 163828 Query 115579 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTT 115638 || || || |||||||| | | |||||| || | |||| | || || | Sbjct 163829 TTAAGACCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCT 163888 Query 115639 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 115698 | ||| || ||||| || || ||||| |||||| || || || || ||||| Sbjct 163889 TTCATATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATC 163948 Query 115699 TCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCT 115758 | | ||| | ||||||||| ||||| |||||||| || ||||| | Sbjct 163949 TGGACAACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCG 164008 Query 115759 GGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCA-TGAGA---TCCTTCAT 115814 ||||| | || || |||| ||||| | || | || ||| | | |||||| Sbjct 164009 GGGATGTTTGGAATGTTCTGGACGGAGCC----GTTTTCAGCAATGATACGGTTCTTCAT 164064 Query 115815 ATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAAC 115874 | | ||||| | || || | ||||||| | ||| ||||| || Sbjct 164065 GGCGTCAGACCACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTG 164124 Query 115875 AAACTCACCCGCGAGGG---TGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCA 115931 ||||| || || ||| ||||| | ||||| |||| ||||| ||||||||||| Sbjct 164125 GAACTCGCCAGCAAGGACTCTGCGTT---GGTAGATATTGGATGTGTACGGCTCAAAGCA 164181 Query 115932 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 115991 ||| |||||||||||||| |||| || ||| || ||||| ||||| | || || || Sbjct 164182 CTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACT 164241 Query 115992 GTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGC-T 116050 |||||| | || | || | || | ||||| || | ||||||| | || | Sbjct 164242 GTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCA-AAGATCGG 164300 Query 116051 TTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 116110 | || | | | |||||| |||||||| || || ||||| || | || || || || Sbjct 164301 AAGGCTTCACATTCCACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGAGCCTTCGT 164360 Query 116111 ATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 116170 |||| |||||||| | ||| || | || | || ||| || || || | Sbjct 164361 ATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGT 164420 Query 116171 ACATTGTCTCAAAAATGCGAGCATTCATTGC-CTTG-GCCTCGTCGGAATCAAACGCGAG 116228 | ||||||||||| || | |||| || || | ||||| || || || | || Sbjct 164421 AAATTGTCTCAAATATCTGCTTGTTCA--GCTCTCGTGCCTCAGGAGACTCGAAAGGCAG 164478 Query 116229 ACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288 || | || |||| || ||||| || || |||| ||||| || | || | Sbjct 164479 GCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCG 164538 Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 ||| || || | || | ||||| || | || ||||| | | |||| | Sbjct 164539 CATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAA 164598 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408 ||| ||||| | || | || || ||||||| | | ||| | | || | Sbjct 164599 GTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGC------C 164652 Query 116409 TTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 116462 ||||||| ||| | || | ||| | || |||| || || || | | ||| Sbjct 164653 TTCATTGTAGTCCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTC 164712 Query 116463 ATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAA 116522 ||| | |||||| || || ||||| || | ||| || || |||||||| | Sbjct 164713 ATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAG 164772 Query 116523 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGT 116582 ||||| || || ||| || || ||||| ||||||||||| | || | || || Sbjct 164773 ATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGT 164832 Query 116583 CTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG 116641 || || |||| || || || || | ||| | | || | | || | ||| ||| Sbjct 164833 TTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTG----ATGGTCTTG- 164887 Query 116642 CTCGCCCCT------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG 116695 || |||| || ||| |||||| |||||| ||||| ||||| ||| || || Sbjct 164888 --CGACCCTTGTTGAGCTTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCA-CCGTAG 164944 Query 116696 C-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCA 116754 | || | || || || | | ||||| | |||| ||| | || || ||| Sbjct 164945 CAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCA 165004 Query 116755 ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT 116814 || |||||||||||||| || || ||||| || || ||||||||| || |||| || Sbjct 165005 ACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACT 165064 Query 116815 TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGT 116874 ||||| | || || || || | |||| || || | | ||||| ||||| || Sbjct 165065 TCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGC 165124 Query 116875 TCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCC 116931 || ||||| | |||| | || ||| ||| | || | ||||| | || Sbjct 165125 TCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCA 165184 Query 116932 GTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCG 116990 || || || || || ||||| ||||||| ||| | || |||||| || ||| || Sbjct 165185 GTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCG 165244 Query 116991 A-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACT 117049 | || || || | |||| | || | |||||||| | |||||||| || ||| || Sbjct 165245 ATGTATGA-AC-CGGTGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCT 165302 Query 117050 TTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 117109 | ||||| ||| || | |||| || |||| || || || || |||| |||| Sbjct 165303 TGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCA 165362 Query 117110 TTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTG 117169 | ||| |||||||| |||| ||| | | || || || || ||||||||||||| Sbjct 165363 TGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTG 165422 Query 117170 GTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGG 117227 | | || || ||| | | |||| ||||||| | |||||| || | ||| Sbjct 165423 GCGAGGCATGTGTGA--AAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTC 165480 Query 117228 AA---TGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTC 117284 || ||||| ||| | ||||||| | || ||||| | ||||| |||||| || Sbjct 165481 AACATTGTCTCCCCAG---ATACCGACAGCAACACGCATGATCATGTGCTGGGGTCGCTC 165537 Query 117285 CATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 | | | ||||| || | ||||||| |||| || || |||| ||| ||||| Sbjct 165538 AACGATCTTGCCATCAAGTTTAAGGAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATA 165597 >seq4 Length=2394644 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 |||||||||||||| || |||||||| || || ||||| |||||||||||||| || Sbjct 143641 TGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCATGAGGCCA 143582 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 ||||||||||||||||| || | | ||| | || ||||||||| || || || Sbjct 143581 CGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCTTCGACGGCA 143522 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| |||| ||||| | || |||| Sbjct 143521 GCGAAGGCAACAAGACGTTGAGCGAAGG 143494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506624837000