Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 104 4e-17 seq16 102 1e-16 >seq4 Length=2394644 Score = 104 bits (114), Expect = 4e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || ||||| || || || || || || |||||||| || ||||||| ||||||||| Sbjct 143665 AATAGGAGACAGGCGAAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAG 143606 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | |||| || ||||||| |||||| || | ||| || |||| ||||| |||||| Sbjct 143605 AATGTGAGACCTGGCATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCG 143546 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || || ||||| || || ||||| || || || || || | | | | || | | || Sbjct 143545 CTGAAGAAGATACCTTCGACGGCAGCGAAGGCAACAAGACGTTGAGCGAAGGTAGACTTC 143486 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATG 160138 |||| |||| | ||||||| |||||||||||| |||| Sbjct 143485 TTGTCGGTAATCCATCGAATGGCCCAGTCAGCCTTCTTTCTGATG 143441 >seq16 Length=1288267 Score = 102 bits (112), Expect = 1e-16 Identities = 229/338 (68%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 ||| || ||| ||| || ||| | || || |||||| ||| ||| || ||||| Sbjct 164905 CTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGACA 164964 Query 205120 TTTTTTGGGACACATCAGAGACCACAT--CTGATCGTCTTTCACCCTCTCCATAAACAGG 205177 || |||||||||||||||| ||| || | | || | || || | || ||| || || Sbjct 164965 TTCGTTGGGACACATCAGAGTCCA-ATCGCCGTTC-TTTTCAACACGCTTCATGAAGAGA 165022 Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237 || ||||||||| || || |||||||| || | || | | || | ||| ||||| Sbjct 165023 TCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTC 165082 Query 205238 TTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296 ||| | ||||| || || | | ||| || ||||| ||||| | | | || | Sbjct 165083 TTTCGGAGGTCCA-TGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAA 165141 Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356 |||||||| | |||||| ||||| || ||||| |||| | ||||| ||||| Sbjct 165142 AGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCG 165201 Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 |||||| || | | |||||||| || || || |||| Sbjct 165202 CAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGC 165239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154454542000