Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq25 159 4e-34 seq10 102 9e-17 seq1 87.8 2e-12 >seq25 Length=449666 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||||| || ||||| |||||| ||||| || |||||| || || ||||| || || Sbjct 296602 GCCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGA 296543 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||| || || |||| |||||||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 296542 TAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGG 296483 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| ||||| | | | |||||| || ||||| Sbjct 296482 GATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 296423 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || || ||||| || ||||| || ||||| ||||| Sbjct 296422 CTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 296375 >seq10 Length=1675152 Score = 102 bits (112), Expect = 9e-17 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || || || | || |||||||||||||| || || Sbjct 199826 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 199767 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||||||| | || | | |||||||||| ||||||| ||||| ||| Sbjct 199766 ATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTT 199708 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | || || || ||||| || | |||||||| || || || Sbjct 199707 GTCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTTCCAGT 199660 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| || || |||||||| || || || || |||| || Sbjct 200225 ACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCC 200166 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||||||| ||||| || | ||||||||||| | || | || ||||||||| Sbjct 200165 AACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGA 200106 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | || ||| || || || || | ||||| || ||| Sbjct 200105 ATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTG 200046 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||| Sbjct 200045 CCGGTGAGGGTCTTGACGAAGATCTGCAT 200017 >seq1 Length=3506016 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || ||||| || | || || | ||| || |||||||| | Sbjct 194384 CCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAA 194443 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| || || ||||| | || | || |||||| || ||| || ||| | | Sbjct 194444 TCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGT 194503 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || |||| |||||||| ||||||||||| || || || | Sbjct 194504 CGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGA 194563 Query 46584 A 46584 | Sbjct 194564 A 194564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237870089000