Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 seq25 122 9e-23 seq10 109 5e-19 seq1 84.2 2e-11 >seq4 Length=2394644 Score = 134 bits (148), Expect = 1e-26 Identities = 195/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || ||||||||||| || || | |||||||| | ||||||||| || || ||| Sbjct 143327 TATGTGTCGATGAGCAGAGAGTATGTCTCCGAGTGGATGTTCTCCATCATAATCTGGAAG 143268 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| || ||||| | ||| || || ||| | |||||| ||||| Sbjct 143267 CCGTAGAAGCAGCGAGCCTCAGGGATCTGGACCTCGCTGCTGAATCTCTCGACGAGATTC 143208 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 |||||||||||||| || |||||||| ||||||| | ||| |||||| | | Sbjct 143207 TCGTTGACGATGCCATCAGACGCGGCGAAGAAGGCCAAAATGTGTGAGATGAAGTATTTC 143148 Query 133348 TCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| ||||| || | | ||| ||| | ||||||||||| || | |||||| Sbjct 143147 TCGTCGTCGTTGATCTTGTTGTTCCAATCGTGAAGATCCTTGGACAGATCAATCTCCTCA 143088 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || ||||| ||||| || |||||||| Sbjct 143087 GCGGTCCAGAAGGACGCTTCGGCCTTCTTGTACAT 143053 >seq25 Length=449666 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || ||||| || || |||||| |||| || ||| | || Sbjct 296375 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 296434 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | || || |||| ||||| ||||| || |||||| ||||| Sbjct 296435 GACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCAT-CCCGCCAGACCA 296493 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| ||||| ||||| || |||| || ||||| || ||||| Sbjct 296494 ACAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAA 296553 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| |||| |||| ||||||||||| | |||| ||| Sbjct 296554 CATTCAGAAGGAGTCGACTTTGCACCTGGTGCTGCGTCTACGAGGAGGC 296602 >seq10 Length=1675152 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||| || | || || ||| | | Sbjct 200245 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCT 200304 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| ||||| || || | || || ||||| || || | |||| Sbjct 200305 GACACAATCGACAACG--TAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACC 200362 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| || || |||||||| |||| |||||||| | |||||||| Sbjct 200363 AGCAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACA 200422 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | ||||| || || || || ||| || | ||||||| Sbjct 200423 ACATCCAGAAGGAGTCTACGCTCCACTTAGTCCTCCGTCTGCGCGGCGGCC 200473 Score = 107 bits (118), Expect = 2e-18 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| |||| || ||| | || Sbjct 200017 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 200076 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| ||||| || || | ||||| ||||| || || | |||| Sbjct 200077 GATACCATCGATAACG--TAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACC 200134 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||||||||| ||| |||| |||| || || ||| ||||||| Sbjct 200135 AGCAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACA 200194 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || ||||| | || || ||| | || || || Sbjct 200195 ACATTCAGAAGGAGTCTACCCTCCATCTCGTCCTCCG 200231 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| |||||||||||| | ||||| ||||| || || | || ||||| Sbjct 199720 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGCAAG 199779 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||||| || || | || |||||| ||||||||||||||| ||||| Sbjct 199780 CAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGA 199826 >seq1 Length=3506016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| |||||||| | || |||||| || | |||| | Sbjct 194564 TTCGTGAAGACTCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 194505 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || ||||||| || || ||||| || || | |||||||| || | Sbjct 194504 GACAATGTGAAGTCCAAAATCCAAGATAAGGAGGGCATCCCTCCGGACCAACAACGATTG 194445 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| || |||||| |||| || | || || || |||||||||||||| ||| Sbjct 194444 ATTTTCGCCGGAAAACAGTTGGAGGATGGCCGAACTCTTTCTGACTACAACATCCAGAAG 194385 Query 38433 G 38433 | Sbjct 194384 G 194384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172331088000