Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq16 214 3e-50 seq4 114 2e-20 >seq16 Length=1288267 Score = 214 bits (236), Expect = 3e-50 Identities = 718/1099 (65%), Gaps = 39/1099 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || || || || ||||| || |||||||| ||| |||||| || |||| | ||||| || Sbjct 164405 GTGAGAGCGGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAG-CTCTCGTGCCTCAGG 164463 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| |||| || || | || | || || || ||||| || |||| ||| Sbjct 164464 AGACTCGAAAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACC 164523 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 ||||||||||| | | ||||| ||||| || ||||| || |||||||||| Sbjct 164524 AATGGGCCTGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTC 164583 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | || || | ||| || | |||| || ||| |||||| ||| | Sbjct 164584 GATGATCTTATTCAAGTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGT- 164642 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAG-CGTTTAGGGCAACGCTGG 221714 || | || ||| || | | | |||||||| | || ||| || || | Sbjct 164643 ------CA--TAGCAGCCTTCATTGTAG---TCCACAAAGGACGGCAAGGCCAGCGAAG- 164690 Query 221715 CCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGT 221774 ||| ||| || ||||| ||||| || | | |||| |||||||| || ||||| | Sbjct 164691 CCAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGAT 164750 Query 221775 TGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGT 221834 || || |||||| || || | || || || |||||||||| ||| || |||| Sbjct 164751 TGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGT 164810 Query 221835 AGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894 ||||||| || || || || || ||| ||| | || || | ||| || | || Sbjct 164811 AGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCT-TC 164869 Query 221895 TG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGT---CTTTTCATACCCG--GTATAGA 221948 || || | | ||| ||| ||||| | | ||| |||||| ||| ||| Sbjct 164870 TGTGCCTTGATGGTC---TTGCG---ACCCTTGTTGAGCTTCTCATACTTTTCGTAGAGA 164923 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || | | |||| |||||||| || ||||||| ||||| | ||||||||||| Sbjct 164924 GCCT--CGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCA 164981 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 || |||| | ||| | || || | || ||||||||| || || |||||||| || Sbjct 164982 GAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGA 165041 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 | |||||||| | | || || ||| ||| | ||| || | || |||| |||| Sbjct 165042 GGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACT 165101 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || | ||| || ||||| ||||| || |||| || | |||||| || |||||||||| Sbjct 165102 CGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGC 165161 Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 |||| ||||||| ||| ||| | ||||||| || || | || | | ||| Sbjct 165162 CACCTTGATCCA-CATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCG 165220 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGGCAG 222305 ||||| || ||||||||| ||||| | |||| ||| | || ||| ||| | Sbjct 165221 TTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCAC---GGATACGGTGGATG 165277 Query 222306 -ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 | ||| |||||||| || || |||||||| || ||| ||||||| ||||| Sbjct 165278 TTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAA 165337 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 |||||||| || ||| ||||| | || | || || || || |||| |||| | Sbjct 165338 ATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGA 165397 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 | || | || || || || || || ||| ||||| || | || ||||||| Sbjct 165398 GGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAACTTGCTGGACATCAAG 165457 Query 222485 TCGTACGTCTCTACGACTC 222503 | ||| || || | ||||| Sbjct 165458 TTGTAGGTTTCAATGACTC 165476 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || || | ||||| | || || ||| |||| Sbjct 164113 GTTGACGACCTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGG 164172 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || ||||||||| |||| |||||| | || |||||||| ||||| ||||| || Sbjct 164173 CTCAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTAC 164232 Query 221236 CAGCAGACTGTTGCG 221250 |||||||||||||| Sbjct 164233 TAGCAGACTGTTGCG 164247 >seq4 Length=2394644 Score = 114 bits (126), Expect = 2e-20 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| || || ||||||||| || |||||||||||| Sbjct 143044 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 143103 Query 25537 GCCAAGGACATGGACGGCTGGTACG-CTCTATCCA--AAGACGAGCAGCATTT--TCTCA 25591 ||||||| | ||| ||| || | ||| | | |||||| | | || ||||| Sbjct 143104 TCCAAGGATCTTCACGATTGGAACAACAAGATCAACGACGACGAGAAATACTTCATCTCA 143163 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || | ||||| ||||| || || |||||||| || || ||||||||||| ||||| Sbjct 143164 C--ACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGA 143221 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||||| ||| || || ||| | ||||| || |||||||| |||||||| Sbjct 143222 GATTCAGCAGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGAT 143276 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 25815 CATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGG 25874 ||||| | |||||| |||||||| ||||| | | | ||| |||| || | Sbjct 143441 CATCAGAAAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGC 143500 Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 | || || || ||||| ||||| || || || ||||| ||||||||| | ||||| | Sbjct 143501 TCAACGTCTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTC 143560 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||| | ||| || || |||||| || || || |||||||||||||| Sbjct 143561 CATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCAT 143620 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 | | |||||||||||||| | ||||| ||||| || || Sbjct 143621 CTCGCGAGACGAGGGTCTCCATACTGATTTCGCCTGTCTCCT 143662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843929208000