Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq4 113 7e-19
seq16 102 1e-15
>seq4
Length=2394644
Score = 113 bits (124), Expect = 7e-19
Identities = 88/105 (84%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||| || ||||||||||| || ||| | || |||||||| || |||||| | |
Sbjct 385678 CCAACTACCTTGATATCAAGCCCCTTCTTGATGTTGGATGCAAGACAGTTGCCAACATGA 385737
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
|||||||||||||||| ||||| || ||||| || || |||||||
Sbjct 385738 TCAAGGGCAAGTCGCCAGAGGAGATTCGCAAAACATTCAACATCA 385782
Score = 93.3 bits (102), Expect = 7e-13
Identities = 172/248 (69%), Gaps = 6/248 (2%)
Strand=Plus/Minus
Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952
||||| ||||| || ||| | || ||| |||||| |||||||||||||| | ||
Sbjct 143956 ACGCCAGCCTTCTGGTAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGA 143897
Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GA 794010
||||| |||||| | ||| ||||||| | | || ||||||| || ||
Sbjct 143896 GAGATGTTCTCCATGAAGTCGAAGGGGTTGGACACCTTATATACCTTCTCGTTGCCAAGA 143837
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
||||| || || || ||||| ||||| || || ||||| ||| |||| |||||||
Sbjct 143836 GCGACC--AGGAGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCGTTCA 143779
Query 794071 TGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129
|||| | || |||| ||||| | |||| | | ||||||| ||| || | ||| ||
Sbjct 143778 TGCC-AAGAAGACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCG 143720
Query 794130 TCGATGAT 794137
|| | |||
Sbjct 143719 TCAACGAT 143712
>seq16
Length=1288267
Score = 102 bits (112), Expect = 1e-15
Identities = 178/259 (69%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
|| || ||||| || || |||| || ||||| || |||||||| | | ||||||||
Sbjct 165167 TGATCCACATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAA 165226
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660
||| ||||||||||| | ||| | || | ||| || | ||| | | |||
Sbjct 165227 GTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTGAGGCCA 165286
Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720
|| || || ||| ||||||||| | || || | || || || ||||| ||||||||
Sbjct 165287 ATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCA 165346
Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780
|| ||| |||||||||| | || ||||| || || ||| | | | |||||
Sbjct 165347 ATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGCCC 165406
Query 2073781 GCATTGAAGAGCGTGGGCG 2073799
||||||||||| || ||||
Sbjct 165407 GCATTGAAGAGGGTTGGCG 165425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916238421907925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |