Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq25 125 5e-24 seq10 116 2e-21 seq1 87.8 1e-12 >seq25 Length=449666 Score = 125 bits (138), Expect = 5e-24 Identities = 161/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||||||||| || || |||||| | || | || Sbjct 296587 CAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTC 296528 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||||| ||| || |||||| |||| | ||||||||||| Sbjct 296527 CTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTC 296468 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || || | ||| | Sbjct 296467 TTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGA 296412 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | ||||| ||||| ||||| || || |||||||||||||| Sbjct 296411 TAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATGAT 296372 >seq10 Length=1675152 Score = 116 bits (128), Expect = 2e-21 Identities = 156/217 (72%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||||||||||||||| |||||||| || | || | || Sbjct 200228 AGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCC 200169 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||| ||||| ||||||||| | || | ||||||||||| Sbjct 200168 TCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 200109 Query 34886 TTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || || || ||| |||| ||||| | | ||| || || | || | Sbjct 200108 TGAATCTTGGACTTTACGTTATCGATGGTATCGGAT-----GACTCAACCTCGAGAGTGA 200054 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| || ||||||||||| || ||||||||||| Sbjct 200053 TCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 200017 Score = 114 bits (126), Expect = 8e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| ||| |||| | || ||||| ||||| || ||||| Sbjct 200436 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 200377 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||||||| | || | |||||||| || | || || || ||| Sbjct 200376 GATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTTACGTT 200317 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| | ||| || || | || ||||||||||| ||||||||||| || Sbjct 200316 GTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGAC 200257 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 200256 GAAGATCTGCATG 200244 Score = 93.3 bits (102), Expect = 3e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || ||| | || |||| || || ||||| || || ||| Sbjct 199826 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 199767 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || ||||||||| | || | ||||||||||| | || || |||||| Sbjct 199766 ATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 199707 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 | || | || | ||| || |||| ||| ||||||||||| |||| Sbjct 199706 TCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTTCCAGTGA 199658 >seq1 Length=3506016 Score = 87.8 bits (96), Expect = 1e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || | || |||| |||| || ||||||||||| | Sbjct 194384 CCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAA 194443 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| |||||| ||||| | || | |||||||| || | ||||| || || Sbjct 194444 TCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGT 194503 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| || | || |||||||| ||||| || ||||| || | Sbjct 194504 CGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGA 194563 Query 34968 A 34968 | Sbjct 194564 A 194564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692502296425