Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq10 134 3e-26
seq25 123 5e-23
seq1 107 4e-18
>seq10
Length=1675152
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| || |||||||| || ||||| || ||||| || || || ||
Sbjct 200471 CCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 200412
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | ||||||||| || || || ||||| ||||| || | ||| || ||||| ||
Sbjct 200411 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 200352
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || |||||||| |||||||| | ||||| || || || || ||| | ||||||
Sbjct 200351 ATACCCTCCTTATCCTGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACT 200292
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || ||||| || || | ||||| || || ||||||||
Sbjct 200291 TCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 200245
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || ||||| || ||||| || || || || || || ||| |||||| || | ||
Sbjct 200219 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCCAACTGC 200160
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || || ||||| |||| || || ||||| || || || ||||| |||||||||||
Sbjct 200159 TTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTG 200100
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| ||||| || || || ||||| | || || || | ||| ||||||||||| ||
Sbjct 200099 GACTTTACGTTATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGTG 200040
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| ||||| || || ||||||||
Sbjct 200039 AGGGTCTTGACGAAGATCTGCAT 200017
>seq25
Length=449666
Score = 123 bits (136), Expect = 5e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||||| | |||||| || | ||||| ||| || || ||||| || || |||||||||
Sbjct 296601 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGAT 296542
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| ||| ||||| || || || || || || ||||| | || ||||| ||||| ||
Sbjct 296541 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGG 296482
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| ||||| ||||| | || ||||| || || || || || || ||
Sbjct 296481 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 296422
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
|| | || || ||||| || || | || || || || |||||||| |||
Sbjct 296421 TCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATGATT 296371
>seq1
Length=3506016
Score = 107 bits (118), Expect = 4e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682
||||| || || || ||||| ||| ||| || || || | |||||||| || || ||
Sbjct 194386 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 194445
Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742
| || |||||| || ||||| || || ||||||||||| || || | || ||||| ||
Sbjct 194446 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 194505
Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801
||||| || | || || |||||||| || |||||||| |||| ||||| || ||
Sbjct 194506 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 194564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981826256525425
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |