Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10 134 3e-26 seq25 123 5e-23 seq1 107 4e-18 >seq10 Length=1675152 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || |||||||| || ||||| || ||||| || || || || Sbjct 200471 CCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 200412 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||||||| || || || ||||| ||||| || | ||| || ||||| || Sbjct 200411 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 200352 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| |||||||| | ||||| || || || || ||| | |||||| Sbjct 200351 ATACCCTCCTTATCCTGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACT 200292 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | ||||| || || |||||||| Sbjct 200291 TCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 200245 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || ||||| || || || || || || ||| |||||| || | || Sbjct 200219 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCCAACTGC 200160 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| |||| || || ||||| || || || ||||| ||||||||||| Sbjct 200159 TTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTG 200100 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||||| || || || ||||| | || || || | ||| ||||||||||| || Sbjct 200099 GACTTTACGTTATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGTG 200040 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 200039 AGGGTCTTGACGAAGATCTGCAT 200017 >seq25 Length=449666 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | |||||| || | ||||| ||| || || ||||| || || ||||||||| Sbjct 296601 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGAT 296542 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| ||||| || || || || || || ||||| | || ||||| ||||| || Sbjct 296541 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGG 296482 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| | || ||||| || || || || || || || Sbjct 296481 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 296422 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | || || ||||| || || | || || || || |||||||| ||| Sbjct 296421 TCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATGATT 296371 >seq1 Length=3506016 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || || || ||||| ||| ||| || || || | |||||||| || || || Sbjct 194386 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 194445 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | || |||||| || ||||| || || ||||||||||| || || | || ||||| || Sbjct 194446 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 194505 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 ||||| || | || || |||||||| || |||||||| |||| ||||| || || Sbjct 194506 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 194564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826256525425