Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq10 114 3e-20 seq25 84.2 5e-11 >seq10 Length=1675152 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || || || |||||||| || |||||| Sbjct 200248 CAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCTGAC 200307 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| |||||| |||||||| || || || || || || ||| ||| Sbjct 200308 ACAATCGACAACGTAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAA 200367 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| ||||||| || | || || ||| |||||| || Sbjct 200368 CGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAACATC 200427 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| |||||||| || ||| Sbjct 200428 CAGAAGGAGTCTACGCTCCAC 200448 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || ||||||||| | || || || || || Sbjct 200020 CAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCCGAT 200079 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| || || || || || ||| || Sbjct 200080 ACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAGCAG 200139 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| |||||||| || ||||||||||| || || | || | | || |||||| | Sbjct 200140 CGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAACATT 200199 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || || || || Sbjct 200200 CAGAAGGAGTCTACCCTCCATCTCGT 200225 >seq25 Length=449666 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || || || || || ||||| | || ||||| ||| ||| Sbjct 296378 CAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 296437 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || || || || ||| ||| || Sbjct 296438 ACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAACAG 296497 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||||||||| |||||| | || || || | || | | ||||||||| | Sbjct 296498 CGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAACATT 296557 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||||| ||| | ||||| || || | || ||| Sbjct 296558 CAGAAGGAGTCGACTTTGCACCTGGTGCTGCGTCTACGA 296596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819664344075