Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 104 3e-16 seq16 91.5 2e-12 >seq4 Length=2394644 Score = 104 bits (114), Expect = 3e-16 Identities = 207/303 (68%), Gaps = 13/303 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||| || ||||| |||||||| |||||| | || | Sbjct 143043 GATTTGGCAAATGTAC-AAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATC 143101 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| | ||| | | | |||||||||| | ||| Sbjct 143102 TGTCCAAGGATCTTCACGAT----TGGAACAACAAGATCAACGACGACGAGAAATACTTC 143157 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| | | ||||| || |||||| ||||||||||| |||||| || | Sbjct 143158 ATCTCACACATTTTGGCCTTCTT-CGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGT 143216 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || | || | | |||||||| | || ||||| || | || ||||| |||||||| Sbjct 143217 CGAGAGATTCAGCAGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGAT 143276 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| || || ||||| || || |||||||| || ||||||| Sbjct 143277 TATGATGGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACACATATATCAAGGA 143336 Query 1456068 CCC 1456070 || Sbjct 143337 GCC 143339 >seq16 Length=1288267 Score = 91.5 bits (100), Expect = 2e-12 Identities = 258/392 (66%), Gaps = 17/392 (4%) Strand=Plus/Minus Query 259791 TCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCG 259850 |||| ||||| |||||| | ||| |||||||||| || | || | |||| | Sbjct 165542 TCGTTGAGCGACCCCAGCACATGATCATGCGTGTTGCTGTCGGTA--TCTGGG------G 165491 Query 259851 ACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTG 259909 | ||||||| | |||| || | | |||||| | ||||| ||||| ||| Sbjct 165490 A----GACAATG---TTGAGCGAGTCATTGAAACCTACAACTTGATGTC-CAGCAAGTTT 165439 Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCG 259969 ||||| || |||| || ||||| ||||| ||||| || | | || || || Sbjct 165438 TTCACACATGCCTCGCCAACCCTCTTCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCA 165379 Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| || | |||||||||| || || |||||||| || ||||| |||||| Sbjct 165378 TGCTTCCTAGTCGACATGAAGGATGACAGCATTGAGGGCATTTACGACACCCTCAAGACC 165319 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 || || | ||||||||| ||| || || || || | | ||| | || ||| Sbjct 165318 TGTGCAATGATCTCCAAGATGGCTGGTGGTATTGGCCTCAACATCCACCGTATCCGTGCC 165259 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGC 260149 | || | ||| | ||||||||||| ||| |||||||| | | |||||||| || Sbjct 165258 ACCGGTTCATACATCGCGGGCACCAATGGCACTTCCAACGGTGTCATTCCCATGCTGCGA 165199 Query 260150 GTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || || || |||| || || || || || || Sbjct 165198 GTCTTCAATAACACTGCTCGTTATGTGGATCA 165167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177803966112150