Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq16 183 4e-41 seq4 95.1 2e-14 >seq16 Length=1288267 Score = 183 bits (202), Expect = 4e-41 Identities = 1106/1752 (63%), Gaps = 59/1752 (3%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| |||||||| || || | ||||| || | |||||| | | Sbjct 163808 CGGAGGTAGTACATTCCGGTCTTAAGACCGAGCTTCCAGCCGGCGAAATGCATGCTGGTG 163867 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480 | |||| ||| || || || ||| || ||||| ||| |||| | ||||||| Sbjct 163868 ATCTTGCCCATAGTCGGGTCTTTCATATGGATGTTCAAGGACTGAGACT--GATCAATGA 163925 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA-ATTTCCCAAACTGTG 110539 || || || | || ||||| | | ||| | | | | |||||||| || || Sbjct 163926 AGGCACCGCGGTCGGCAGCCATCTGGACAACAGTACGC-TGTGAGATTTCCCAGACAGTC 163984 Query 110540 CGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCC 110599 ||||| |||||||| | ||||| | || || ||||||| ||| || | Sbjct 163985 TTGTAGAGGGCTTTGATATCTGCGGGGATGTTTGGAATGTTCTGGACGGAGCC----GTT 164040 Query 110600 TTCACCA-TGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655 |||| || ||| | | |||||| | | ||||| | || || | || || || Sbjct 164041 TTCAGCAATGATACGGTTCTTCATGGCGTCAGACCACAAGCCCATGTCAACCAGATCCTT 164100 Query 110656 GACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTT 110715 | ||| |||||| | ||||| || || ||| ||| | ||||||| || Sbjct 164101 TAGGAGCCAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATT 164160 Query 110716 TGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 110775 | |||||| || |||||||| || || ||||||||||| || | || ||| || || Sbjct 164161 GGATGTGTACGGCTCAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGG 164220 Query 110776 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 ||||||||| | | |||||||| |||| || | | ||||||| | ||||| || Sbjct 164221 CATTGGTGCTACTAGCAGACTGTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGA 164280 Query 110836 ATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 |||||| | || | | || ||||| || ||||||||||||||| || | ||| Sbjct 164281 TGCCCAGTCCCAAAGAT-CGGAAGGCTTCACATT-CCACATGTCAAACTGCAGAATGCCT 164338 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 110953 || || | ||||| || || | || || | ||||| | | || | || | Sbjct 164339 TGAGATACAGGAGAGCCTTCGTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATG 164398 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013 || || | || || || || || ||||| || | |||| ||| || Sbjct 164399 GAAGCAGTGAGAGCGGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCC 164458 Query 111014 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 111073 ||| || || || | ||| | || |||| || ||||| ||||| || Sbjct 164459 TCAGGAGACTCGAAAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCG 164518 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 111133 | |||||| || ||||| ||||| || || | || | |||||| || | || Sbjct 164519 ACACCAATGGGCCTGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTG 164578 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTG-GTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 ||| |||| || || | ||| | ||||| | || | || || || |||| Sbjct 164579 ACGTCGATGA-TCTTATTCAAGTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTG 164637 Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGC 111246 | ||| | || || |||||||| ||| | || | ||| | || || Sbjct 164638 GAAGTCATA---GC-AG--CCTTCATTGTAGTCCACAAAGGACGGCAAGGCCAGCGAAGC 164691 Query 111247 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT 111306 ||| ||||| || || |||||| | |||||| | || || || || | || Sbjct 164692 CAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATT 164751 Query 111307 GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTA 111366 ||| || || || || | |||||| ||||| ||||| ||||| ||||| ||||| Sbjct 164752 GGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTA 164811 Query 111367 GAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGG 111425 ||||||| | || | || || || ||||| | | || || || | ||||| | || | Sbjct 164812 GAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTG 164871 Query 111426 CGGCTGGTACAATGGCGTTG-GCCCGTCCCTCCGC--CTCGTACTTTGTGTAGAGGGCTT 111482 | || | |||| ||| | || | | || ||| |||||| |||||| || | Sbjct 164872 TGCCTTG----ATGGTCTTGCGACCCTTGTTGAGCTTCTCATACTTTTCGTAGAGAGCCT 164927 Query 111483 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACC 111542 | ||||| ||||| ||| | || || || | || ||||| | |||| || Sbjct 164928 CGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCC 164987 Query 111543 ATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 111602 | | || | ||||| ||||||||||| || || ||||||||||||| |||| Sbjct 164988 AATCGCCGTTCTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGA 165047 Query 111603 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 111662 |||| | ||| | ||||| | || ||||| ||| | || | |||||| | | Sbjct 165048 GATCACGTGCGCGAACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACA 165107 Query 111663 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 111716 ||||| ||||| |||||||| |||| ||||| || || | | ||| ||| Sbjct 165108 CGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAAGCGCC---TGGGCGCTTGTTGCCAC 165164 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||||| ||||| || || ||| || || || || ||||| ||||| | ||| | | Sbjct 165165 CTTGATCCACATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGG 165224 Query 111777 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 111836 | ||||| || ||| || || |||| | | | ||||||| | | Sbjct 165225 AAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTGAGGC 165284 Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896 ||||||| |||||| ||| ||||| ||||| | | || || | || || || | Sbjct 165285 CAATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCT 165344 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956 || ||| ||||| || ||| |||||||| |||| || | || || | Sbjct 165345 CAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGC 165404 Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTA 112014 | ||||||||||||||||| | || || ||| | | |||| ||||||| || ||| Sbjct 165405 CCGCATTGAAGAGGGTTGGCGAGGCATGTGTGA--AAAACTTGCTGGACATCAAGTTGTA 165462 Query 112015 TGTCTCCAAGACAGAATCAA---TGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAA 112071 || || | ||| |||| ||||| ||| ||| |||| || || ||||||| Sbjct 165463 GGTTTCAATGACTCGCTCAACATTGTCTCCCC---AGATACCGACAGCAACACGCATGAT 165519 Query 112072 CATGTACTGTGG 112083 ||||| ||| || Sbjct 165520 CATGTGCTGGGG 165531 >seq4 Length=2394644 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 ||||||||||| ||||| || || || || || ||||| |||||||||||||| || Sbjct 143641 TGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCATGAGGCCA 143582 Query 122731 CGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||||||| | || | ||| || | ||| |||||||||||| || || Sbjct 143581 CGCTTCTTCAACCAGAAGATGGAAGCA-AAGGCACCGCTGAAGAAGATACCTTCGACGGC 143523 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 || || |||| ||| |||| ||||||| Sbjct 143522 AGCGAAGGCAACAAGACGTTGAGCGAAGG 143494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031411220000