Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 212 2e-49 seq10 118 3e-21 seq1 87.8 5e-12 >seq2 Length=3202410 Score = 212 bits (234), Expect = 2e-49 Identities = 929/1462 (64%), Gaps = 10/1462 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | || || || || || ||||||| | | | | | ||| | Sbjct 681308 GCCATCGGTATCGATCTTGGAACCACATACTCGTGTGTTGGTATCTATCGCGAGGATAGA 681367 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | || || || || || || || || || |||| || || || | ||| ||||| || Sbjct 681368 ATCGAGATCATCGCGAACGACCAGGGAAATCGAACCACCCCGTCGTTCGTGGCATTCACG 681427 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| |||| || ||| | || || || |||| || || || | || Sbjct 681428 GACACCGAGCGTCTGATCGGAGATGCCGCCAAGAACCAAGTCGCGATGAACCCCCACAAC 681487 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || || ||||| ||||| || ||||| | | || || ||| || | Sbjct 681488 ACAGTCTTCGATGCGAAGCGCCTCATTGGCCGCAAGTTCTCCGACTCGGAGGTGCAGGCC 681547 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | || || || || || | | | || | ||| || | | || | | ||| Sbjct 681548 GATATGAAGCACTTCCCATTCAA-GATCATCGACAAGGCGAGCA--AGCCTGTGGTCGAG 681604 Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 | || | || || || || || || || ||| || || || || ||| | || Sbjct 681605 ATCGAGTTCAAGGGCGAGACCAAGACC-TTCACACCTGAGGAGATCAGCTCCATGATCTT 681663 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || || ||| || | |||||| | || | |||| | || | | || ||||| Sbjct 681664 GGTAAAGATGCGAGAGACTGCTGAGTCTTACCTTGGTGTCCCGGTCAACAACGCCGTTAT 681723 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||| || ||||| || || ||| | ||||| || || || || ||||| ||| Sbjct 681724 CACTGTCCCCGCCTACTTCAACGATTCTCAGCGACAAGCCACCAAGGACGCTGGTCTCAT 681783 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || | || ||||| |||| || ||||| || |||||||| || ||||| || || Sbjct 681784 CGCAGGCCTCAACGTTCTCCGAATCATCAATGAGCCTACTGCTGCCGCCATTGCTTACGG 681843 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 ||||| || | || ||| || |||| |||| || |||||| | |||||||| || Sbjct 681844 TCTTGACAAGAAGATTGAGGGCGAGCGAAATGTTCTCATCTTTGATCTCGGTGGTGGCAC 681903 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||| ||||| || || || || | || || || || || || || || | || ||||| Sbjct 681904 TTTCGATGTTTCTCTCCTGACTATCGAGGAAGGTATCTTCGAGGTCAAGTCGACCGCTGG 681963 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 |||||| || | ||||| || || || || || ||||| || || || || || || Sbjct 681964 TGATACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTCAACGA 682023 Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 || ||||| ||||| || | || | || | | || |||| || || Sbjct 682024 GTTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCCAACGCCCGTGCGCTGCGACGACTCC 682082 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 ||||||| || || ||||| ||||| || | || || | |||| ||||| || || | Sbjct 682083 GAACTGCCTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCGGCCCAGACCTCCATCGAGA 682142 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | || ||||| ||| || | ||||||| | || || || || || || || |||| Sbjct 682143 TCGACTCTCTCTTTGAGGGTATTGATTTCTACACCTCCATCACCCGAGCCCGATTCGAAG 682202 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | || || |||||| || || | || | | ||||| || || | |||| Sbjct 682203 AGTTGTGCCAGGATCTCTTCCGATCCACCCTCCAGCCTGTCGACCGTGTCCTCTCGGATG 682262 Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 | || || ||| ||| | | || | || | || || ||||| || ||||| | Sbjct 682263 CCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTTGTCGGCGGTTCCACCCGTATCC 682322 Query 350217 CAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTA 350276 | | | || || | | | || | || || || || || || | || || | Sbjct 682323 CCCGAATCCAGAAGCTCATCACCGACTACTTCAACGGAAAGGAGCCCAACAAGTCCATCA 682382 Query 350277 ATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATA 350336 | || ||||| |||||||| || || || ||||| ||||| | || || ||||| | | Sbjct 682383 ACCCCGATGAGGCTGTTGCCTACGGCGCCGCTGTCCAGGCCGCCATCTTGTCTGGTGACA 682442 Query 350337 AGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGAT 350393 || || || || | || || || ||||| | || || || || || Sbjct 682443 CCTCCTCCAAGGGAACCAGCGAGATCTTGCTTCTCGATGTTGCCCCGCTCTCTCTCGGTA 682502 Query 350394 TAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAA 350453 | || ||| |||||| | ||||| || || || |||| | ||| | ||||| | Sbjct 682503 TCGAGACTGCTGGTGGCATGATGACCAAGCTCATCCCGCGAAACACCACTATCCCTACCA 682562 Query 350454 AAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTAT 350513 | |||||| | || ||||| || |||| || ||||| | || || || || | Sbjct 682563 AGAAGTCCGAGGTCTTCTCTACCTTCTCAGACAACCAGCCTGGTGTGCTCATCCAGGTCT 682622 Query 350514 TTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTG 350573 || ||||| ||| ||||| || || || || || || | || || | | Sbjct 682623 ACGAGGGTGAGCGTCAGCGCACCAAGGACAACAACCTTCTCGGCAAGTTCGAGCTTACCG 682682 Query 350574 AAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAA 350633 || ||||| || |||| ||||||||||| || ||| | |||||| ||||| | | Sbjct 682683 GCATCCCACCTGCACCCCGAGGTGTTCCTCAGATCGAGGTCACCTTCGATCTTGATGCCA 682742 Query 350634 ATGGTATTTTAAATGTTACCGC 350655 ||||||| | || ||| |||| Sbjct 682743 ATGGTATCATGAACGTTTCCGC 682764 >seq10 Length=1675152 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 || || |||||||| || || || || || || | || || || ||||| || || Sbjct 200447 TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGC 200388 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||| ||||| ||||||||||| || || || || || || ||||||||||| || Sbjct 200387 TTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTG 200328 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | ||||| || || || | ||||| | || ||||| | |||| ||||||||||| Sbjct 200327 GACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTTCCGGTG 200268 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 200267 AGGGTCTTGACGAAGATCTGCAT 200245 Score = 91.5 bits (100), Expect = 4e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 140547 TCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAG 140606 || || || || || || || || | ||||| ||||| || || || || ||||||||| Sbjct 199826 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 199767 Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666 || || || ||||| || || |||||||| || || ||||| || || | || || || Sbjct 199766 ATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 199707 Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || || | ||| || | || || ||||| || | |||||||| || | ||| Sbjct 199706 TCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTTCCAGTGACTGT 199654 >seq1 Length=3506016 Score = 87.8 bits (96), Expect = 5e-12 Identities = 131/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAA--CAGTAACTGATGCTGTTATTA 349619 ||||||||||| | |||||| || ||||| || || |||| | |||| || | | Sbjct 2358103 AAAATGAAGGAGACTGCTGAGGCCTATTT--GTCCAAGCCAGTCAAGAATGCCGTCGTCA 2358046 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 | || ||||||||||| |||||| |||| ||| || || || || |||||| ||| Sbjct 2358045 CAGTGCCAGCCTATTTCAATGATTCCCAACGTCAAGCTACCAAGGACGCTGGCCAAATTT 2357986 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || || || ||||| || | | || || ||||||||||| || |||| || ||| Sbjct 2357985 CCGGATTGAACGTTCTCCGAGTCGTCAACGAGCCCACTGCTGCCGCCCTTGCCTA-CGGC 2357927 Query 349740 TTG 349742 ||| Sbjct 2357926 TTG 2357924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252943935225