Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq16 210 2e-49 seq4 122 1e-22 seq1 107 2e-18 >seq16 Length=1288267 Score = 210 bits (232), Expect = 2e-49 Identities = 486/727 (67%), Gaps = 18/727 (2%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 ||| ||| ||| || ||| |||| ||| | |||| || || || ||| ||||||| Sbjct 165478 GCGAGTCATTGAAACCTACAACTTGATGTCCAGCAAGTTTTTCACACATGCCTCGCCAAC 165419 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||| ||||| || || || ||| |||| |||| |||||||| || | ||||| Sbjct 165418 CCTCTTCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTAGTCGACATGAA 165359 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||||||| || || ||||| ||||| || |||||| ||||| ||||||||| Sbjct 165358 GGATGACAGCATTGAGGGCATTTACGACACCCTCAAGACCTGTGCAATGATCTCCAAGAT 165299 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAG 53470 | | |||||||| || || || || | ||| |||||| | ||| || ||| | Sbjct 165298 GGCTGGTGGTATTGGCCTCAACA--TCCACCGTATCCGTGCCACCGGTTCATACATCGCG 165241 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || || ||| || | || || | || ||||| || |||||||| ||||| || Sbjct 165240 GGCACCAATGGCACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTCAATAACACTGCT 165181 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || || || | || ||||| |||||| || | ||||| |||||||| ||||| Sbjct 165180 CGTTATGTGGATCAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATCTACCTTGAGCCT 165121 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||| || ||| | | ||||| | || || || ||| || || | ||||| | Sbjct 165120 TGGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTT 165061 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||||| || || || ||||||||||| || ||||||||| | || || Sbjct 165060 CGCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGAA 165001 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTA 53769 ||| ||| || ||| |||||||| || ||||| || |||||||| | | || ||| Sbjct 165000 AAGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTG-CTA 164942 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTA--CGCAGTTC----AGGGCCGCTACAA 53823 |||||| ||||| | | | || | ||| | || || |||| ||| Sbjct 164941 CGGTGACGAGTTCGAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGGGTCGC----- 164887 Query 53824 GAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGG 53883 |||| ||||||| | || | ||| |||| ||||| || |||| || || || Sbjct 164886 -AAGACCATCAAGGCACAGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGG 164828 Query 53884 AACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || || | |||| |||||| ||| | ||| ||||||||||||||||| | || Sbjct 164827 AAACCCTTTCATGCTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTTGG 164768 Query 53944 CGTCATC 53950 | |||| Sbjct 164767 CACCATC 164761 >seq4 Length=2394644 Score = 122 bits (134), Expect = 1e-22 Identities = 307/454 (68%), Gaps = 16/454 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 ||||| |||| ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 143941 TAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTCTCCATG 143882 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTG-CCATGAGG 74579 ||||||| ||||| |||| || ||| |||||| | || | | ||| ||| Sbjct 143881 AAGTCGAAGGGGTTGGA--CACCTTATATAC-CTTCTCGTTGCCAAGAGCGACCAGGAGT 143825 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 ||||| || || || | || |||||| |||| ||| | |||||| | || Sbjct 143824 CGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCGTTCATGCCAAGAAGACCA 143765 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGG--ACAATC 74696 || ||||| |||||||| | ||||| ||| | | | ||| || | ||| | Sbjct 143764 CATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAACATCC 143705 Query 74697 TTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 | | | | |||| || | || ||||| ||||||| | || | || ||| || Sbjct 143704 TGGACCACTTGTTTGCTTGGTCGATT---CCTCAAGTGAGAGAATAGGAGACA-GGCGAA 143649 Query 74756 CTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 || ||| ||| || || |||| || | || || || || | || || |||| Sbjct 143648 ATCAGTATG-GAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCA 143590 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || ||||||||||||||||| ||||||| | |||| ||| ||||||||||| |||| Sbjct 143589 TGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCTT 143530 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||| || ||||| ||||| ||||| ||||| Sbjct 143529 CGACGGCAGCGAAGGCAACAAGACGTTGAGCGAA 143496 >seq1 Length=3506016 Score = 107 bits (118), Expect = 2e-18 Identities = 182/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 152061 GCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGC 152120 |||||| || || || | |||||| | |||| ||| |||||| ||||| |||||||| Sbjct 2041456 GCCACCGGCGAGACGTGATCCAAAATTTCCACTGGGTTCGAGGCAGTTGACGTTGTTGGA 2041397 Query 152121 GCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTG 152180 || ||||| | || || | | || || |||||| ||||||| ||||| Sbjct 2041396 ACCGACGAAGGTTTGTGCGAGGCCGATGATTGTTTGCTGCAGCGAAACTTCACCATGGTG 2041337 Query 152181 ATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAG 152240 ||||| || ||||| | |||||| || ||||| | |||||| |||| | | Sbjct 2041336 ATACGAAGTTTGCTCGGAGATGTAACCAGCCAATTCAATGACCTTCTGGTCCTTGAGAAT 2041277 Query 152241 GTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||||||||||| ||| |||||||| || || || || || ||||| ||||| | || Sbjct 2041276 GTTCTTCTTGAAACATGCGTAAATGACTTTTCGTTGACCAGGCTTCAATCCGTCAATAAC 2041217 Query 152301 GTGAGGAATCGAACGCTTGATGTC 152324 | || || || ||| || |||| Sbjct 2041216 GGAGGGGATGGACCGCATGTTGTC 2041193 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 117311 ATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTC 117370 || ||||||| || ||||| || |||||| || ||||| | || || | |||||| Sbjct 2041482 ATATAACGAGGACTAGCAGCGTCTGAGCCACCGGCGAGACGTGATCCAAAATTTCCACTG 2041423 Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430 || || | | ||| | |||||||| || || ||| |||| || | | || || || Sbjct 2041422 GGTTCGAGGCAGTTGACGTTGTTGGAACCGACGAAGGTTTGTGCGAGGCCGATGATTGTT 2041363 Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGC 117490 || || | |||||||||||||||| || ||||| | | ||| || |||| Sbjct 2041362 TGCTGCAGCGAAACTTCACCATGGTGATACGAAGTTTGCTCGGAGATGTAACCAGCCAAT 2041303 Query 117491 TGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGC 117548 | | |||||| ||| ||| | ||||||||||| || || ||||| || || | Sbjct 2041302 TCAATGACCTTCTGGTCCTTGAGA--ATGTTCTTCTTGAAACATGCGTAAATGACTTTTC 2041245 Query 117549 GCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 | |||| ||||||| || || ||| ||||| || ||| || |||| Sbjct 2041244 GTTGACCAGGCTTCAATCCGTCAATAACGGAGGGGATGGACCGCATGTTGTC 2041193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215486985000