Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq16 210 2e-49
seq4 122 1e-22
seq1 107 2e-18
>seq16
Length=1288267
Score = 210 bits (232), Expect = 2e-49
Identities = 486/727 (67%), Gaps = 18/727 (2%)
Strand=Plus/Minus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292
||| ||| ||| || ||| |||| ||| | |||| || || || ||| |||||||
Sbjct 165478 GCGAGTCATTGAAACCTACAACTTGATGTCCAGCAAGTTTTTCACACATGCCTCGCCAAC 165419
Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352
||| ||||| || || || ||| |||| |||| |||||||| || | |||||
Sbjct 165418 CCTCTTCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTAGTCGACATGAA 165359
Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412
||||||| || || ||||| ||||| || |||||| ||||| |||||||||
Sbjct 165358 GGATGACAGCATTGAGGGCATTTACGACACCCTCAAGACCTGTGCAATGATCTCCAAGAT 165299
Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAG 53470
| | |||||||| || || || || | ||| |||||| | ||| || ||| |
Sbjct 165298 GGCTGGTGGTATTGGCCTCAACA--TCCACCGTATCCGTGCCACCGGTTCATACATCGCG 165241
Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530
|| || || ||| || | || || | || ||||| || |||||||| ||||| ||
Sbjct 165240 GGCACCAATGGCACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTCAATAACACTGCT 165181
Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590
|| || || | || ||||| |||||| || | ||||| |||||||| |||||
Sbjct 165180 CGTTATGTGGATCAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATCTACCTTGAGCCT 165121
Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650
||||| || ||| | | ||||| | || || || ||| || || | ||||| |
Sbjct 165120 TGGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTT 165061
Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710
||| ||||| || || || ||||||||||| || ||||||||| | || ||
Sbjct 165060 CGCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGAA 165001
Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTA 53769
||| ||| || ||| |||||||| || ||||| || |||||||| | | || |||
Sbjct 165000 AAGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTG-CTA 164942
Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTA--CGCAGTTC----AGGGCCGCTACAA 53823
|||||| ||||| | | | || | ||| | || || |||| |||
Sbjct 164941 CGGTGACGAGTTCGAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGGGTCGC----- 164887
Query 53824 GAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGG 53883
|||| ||||||| | || | ||| |||| ||||| || |||| || || ||
Sbjct 164886 -AAGACCATCAAGGCACAGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGG 164828
Query 53884 AACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
|| || | |||| |||||| ||| | ||| ||||||||||||||||| | ||
Sbjct 164827 AAACCCTTTCATGCTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTTGG 164768
Query 53944 CGTCATC 53950
| ||||
Sbjct 164767 CACCATC 164761
>seq4
Length=2394644
Score = 122 bits (134), Expect = 1e-22
Identities = 307/454 (68%), Gaps = 16/454 (4%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
||||| |||| ||||| || || ||||||||||| || | | ||||||||||||||
Sbjct 143941 TAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTCTCCATG 143882
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTG-CCATGAGG 74579
||||||| ||||| |||| || ||| |||||| | || | | ||| |||
Sbjct 143881 AAGTCGAAGGGGTTGGA--CACCTTATATAC-CTTCTCGTTGCCAAGAGCGACCAGGAGT 143825
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
||||| || || || | || |||||| |||| ||| | |||||| | ||
Sbjct 143824 CGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCGTTCATGCCAAGAAGACCA 143765
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGG--ACAATC 74696
|| ||||| |||||||| | ||||| ||| | | | ||| || | ||| |
Sbjct 143764 CATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAACATCC 143705
Query 74697 TTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755
| | | | |||| || | || ||||| ||||||| | || | || ||| ||
Sbjct 143704 TGGACCACTTGTTTGCTTGGTCGATT---CCTCAAGTGAGAGAATAGGAGACA-GGCGAA 143649
Query 74756 CTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814
|| ||| ||| || || |||| || | || || || || | || || ||||
Sbjct 143648 ATCAGTATG-GAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCA 143590
Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874
| || ||||||||||||||||| ||||||| | |||| ||| ||||||||||| ||||
Sbjct 143589 TGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCTT 143530
Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
|||| || ||||| ||||| ||||| |||||
Sbjct 143529 CGACGGCAGCGAAGGCAACAAGACGTTGAGCGAA 143496
>seq1
Length=3506016
Score = 107 bits (118), Expect = 2e-18
Identities = 182/264 (69%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 152061 GCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGC 152120
|||||| || || || | |||||| | |||| ||| |||||| ||||| ||||||||
Sbjct 2041456 GCCACCGGCGAGACGTGATCCAAAATTTCCACTGGGTTCGAGGCAGTTGACGTTGTTGGA 2041397
Query 152121 GCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTG 152180
|| ||||| | || || | | || || |||||| ||||||| |||||
Sbjct 2041396 ACCGACGAAGGTTTGTGCGAGGCCGATGATTGTTTGCTGCAGCGAAACTTCACCATGGTG 2041337
Query 152181 ATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAG 152240
||||| || ||||| | |||||| || ||||| | |||||| |||| | |
Sbjct 2041336 ATACGAAGTTTGCTCGGAGATGTAACCAGCCAATTCAATGACCTTCTGGTCCTTGAGAAT 2041277
Query 152241 GTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300
||||||||||| ||| |||||||| || || || || || ||||| ||||| | ||
Sbjct 2041276 GTTCTTCTTGAAACATGCGTAAATGACTTTTCGTTGACCAGGCTTCAATCCGTCAATAAC 2041217
Query 152301 GTGAGGAATCGAACGCTTGATGTC 152324
| || || || ||| || ||||
Sbjct 2041216 GGAGGGGATGGACCGCATGTTGTC 2041193
Score = 89.7 bits (98), Expect = 6e-13
Identities = 196/292 (67%), Gaps = 4/292 (1%)
Strand=Plus/Minus
Query 117311 ATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTC 117370
|| ||||||| || ||||| || |||||| || ||||| | || || | ||||||
Sbjct 2041482 ATATAACGAGGACTAGCAGCGTCTGAGCCACCGGCGAGACGTGATCCAAAATTTCCACTG 2041423
Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430
|| || | | ||| | |||||||| || || ||| |||| || | | || || ||
Sbjct 2041422 GGTTCGAGGCAGTTGACGTTGTTGGAACCGACGAAGGTTTGTGCGAGGCCGATGATTGTT 2041363
Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGC 117490
|| || | |||||||||||||||| || ||||| | | ||| || ||||
Sbjct 2041362 TGCTGCAGCGAAACTTCACCATGGTGATACGAAGTTTGCTCGGAGATGTAACCAGCCAAT 2041303
Query 117491 TGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGC 117548
| | |||||| ||| ||| | ||||||||||| || || ||||| || || |
Sbjct 2041302 TCAATGACCTTCTGGTCCTTGAGA--ATGTTCTTCTTGAAACATGCGTAAATGACTTTTC 2041245
Query 117549 GCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600
| |||| ||||||| || || ||| ||||| || ||| || ||||
Sbjct 2041244 GTTGACCAGGCTTCAATCCGTCAATAACGGAGGGGATGGACCGCATGTTGTC 2041193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215486985000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |