Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq16 253 2e-62 seq10 167 3e-36 seq25 136 5e-27 seq14 100 3e-16 seq1 98.7 1e-15 seq4 89.7 6e-13 >seq16 Length=1288267 Score = 253 bits (280), Expect = 2e-62 Identities = 894/1382 (65%), Gaps = 42/1382 (3%) Strand=Plus/Plus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| |||||||| ||||||||| || | |||||| | || || || || ||||| Sbjct 164165 GTGTACGGCTCAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATT 164224 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGAC 80514 || | || | ||| || || | ||| ||| |||||| | ||| || || | Sbjct 164225 GGTGCTACTAGCAGACTGTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCC 164284 Query 80515 CAA----AAATCAACCCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCC 80568 || ||| | | || ||| | || ||||||||| ||||| ||||| | Sbjct 164285 CAGTCCCAAAG--ATCGGAAGGCT-TCACATTCCACATGTCAAACTGCAGAATGCCTTGA 164341 Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGAC 80628 || | ||||| || || | || ||| ||||| | | |||||| ||||| || Sbjct 164342 GATACAGGAGAGCCTTCGTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAA 164401 Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGT 80688 | | || || || || ||||| |||||| | |||||||| | || |||| Sbjct 164402 GCAGTGAGAGCGGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCCTCA 164461 Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748 || ||||| | || || | | |||| | || || || ||||||||||||| Sbjct 164462 GGAGACTCGAAAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACA 164521 Query 80749 GCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTA 80808 | || || | ||||||| |||| || || ||||||| ||||| |||| Sbjct 164522 CCAATGGGCCTGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACG 164581 Query 80809 TCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAG 80868 ||||||| |||| ||| || |||||| |||||||| || || || || ||| Sbjct 164582 TCGATGATCTTATTCAAGTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAG 164641 Query 80869 TCGAA------TTGGTTCCCCTTCACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCA 80921 || | || || | |||||| | ||| ||||| ||| || |||| ||||| Sbjct 164642 TCATAGCAGCCTTCATTGTAGTCCACAAAGGACGGCAAGGC-CAGCGAAGCCAAGTTGCA 164700 Query 80922 CACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT 80981 ||||| ||||| || | | |||||| ||| |||||||| | ||| || Sbjct 164701 GACGGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCG 164760 Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTA 81041 || || || || || |||||||| |||| |||||||| || |||||| |||| | Sbjct 164761 GATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAA 164820 Query 81042 CGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101 ||| | ||||| || ||| | || |||||||| | ||||| || | ||||||| Sbjct 164821 AGGGTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGAT 164880 Query 81102 CACCTTGCGGAATTTGCCTTCGGC--CACATACTTGGCGTAAGCTTCGTCGAACTTGGCA 81159 |||||| ||| || || | ||||||| |||| | ||||||| | || Sbjct 164881 GGTCTTGCGACCCTTG--TTGAGCTTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCA 164938 Query 81160 CCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTC 81218 |||| | ||| ||| ||| | || || ||||| || |||||||| ||| ||| || Sbjct 164939 CCGTAGCAGT-CAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTT 164997 Query 81219 GTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCA 81278 || || ||| ||||||||| ||||| ||||| |||||| ||| || || || Sbjct 164998 CTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGC 165057 Query 81279 GCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATG 81338 ||| | || || | || ||||| || | || | || || | | ||||||||| Sbjct 165058 GCGAACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATG 165117 Query 81339 CCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTA 81395 ||| ||||| || || | |||| | || ||| |||||| || | || || Sbjct 165118 CCAAGGCTCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATA 165177 Query 81396 ACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGT 81455 ||| ||||| || || || |||| ||| || |||| ||| | || || || || Sbjct 165178 ACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGT 165237 Query 81456 ACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGA 81515 ||| |||| || || |||| || | | ||| || || || ||||| | Sbjct 165238 GCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGC 165297 Query 81516 CCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTT 81575 | ||| || ||| ||||| || | ||| || ||||| ||||| ||||| || | Sbjct 165298 CATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATC 165357 Query 81576 TTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCA 81627 |||||||| ||||| ||| |||| |||| ||||||| | ||| ||| Sbjct 165358 CTTCATGTCGACTAGGAAGCATGAAGACAG-TTGA-GCCTGAGGG------GTGCCCGCA 165409 Query 81628 TTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCC 81687 ||||| || ||||| | || || ||||| | | | ||||||| || |||||||| Sbjct 165410 TTGAAGAGGGTTGGCGAGGCATGTGTGAAAAACTTGCTGGACATCAAGTTGTAGGTTTCA 165469 Query 81688 TTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGG 81747 |||| || || || ||| || ||||||| ||| |||||||| | ||||| |||| Sbjct 165470 ATGACTCGCTCAACATTGTCTCCCCAGATACCGACAGCAACACGCATGATCATGTGCTGG 165529 Query 81748 GG 81749 || Sbjct 165530 GG 165531 >seq10 Length=1675152 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || ||||| |||||||||||| Sbjct 200017 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 200076 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || ||||| ||||||||||| || || ||||||||| Sbjct 200077 GATACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 200136 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| | ||||| | ||| || || | ||||| || Sbjct 200137 CAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAAC 200196 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || ||||| ||| | || ||||| ||||| Sbjct 200197 ATTCAGAAGGAGTCTACCCTCCATCTCGTCCTCCGCCTTCGTGGTGG 200243 Score = 152 bits (168), Expect = 6e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| ||||| ||||| | || || ||||| | Sbjct 200245 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCT 200304 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || |||||||| |||||||| || || ||||||||| Sbjct 200305 GACACAATCGACAACGTAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 200364 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||| || || ||||||||||| || || || | ||| ||||| ||| ||||| || Sbjct 200365 CAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGC-GACTACAA 200423 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || ||||| | ||||| ||||| || || Sbjct 200424 CATCCAGAAGGAGTCTACGCTCCACTTAGTCCTCCGTCTGCGCGGCGGCCA 200474 Score = 131 bits (144), Expect = 2e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||| ||||| |||| || | || | ||| | Sbjct 199660 ACTGGAAAGACCATCACCCTTGAGGTGGAGTCTTCGGATACTATCGACAACGTCAAGTCG 199719 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||||||||| |||||||||||||| || || |||||||| ||| Sbjct 199720 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGCAAG 199779 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 || |||||||||| || ||||| | ||||| || |||| ||||| Sbjct 199780 CAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGA 199826 >seq25 Length=449666 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| ||||| || ||||| || |||||||| || || ||||| ||||| Sbjct 296372 ATCATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCT 296431 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || || ||||||||||| || || |||||| Sbjct 296432 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGAC 296491 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || ||||| | || || || || ||||| |||||||| | || |||||| | || || Sbjct 296492 CAACAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTAC 296551 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| || ||| | || || || ||||||| || || || Sbjct 296552 AACATTCAGAAGGAGTCGACTTTGCACCTGGTGCTGCGTCTACGAGGAGG 296601 >seq14 Length=1339294 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 |||||| ||||| ||||| ||||||||||| || ||||||||| | | || || Sbjct 355186 GCAAATATTTGTGAAGACTAAGACCGGCAAGACAATAACTCTTGAGTGTCACCCATCAGA 355127 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | || | ||| | ||| ||||||||| |||||||| || ||||| ||||||||||| Sbjct 355126 CACGATCGACAATGTCAAGAGTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAGCA 355067 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 || || || ||||| || ||||| | || |||| Sbjct 355066 ACGACTGATCTTTGCAGGAAAGCAGTTGGAAGATG 355032 >seq1 Length=3506016 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/293 (68%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 31953 AGATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGT 32012 ||| | || ||||||||| || ||| ||||| | |||||| || || || || Sbjct 2041192 AGACAACATGCGGTCCATCCCCTCCGTTATTGACGGATTGAAGCCTGGTCAACGAAAAGT 2041251 Query 32013 GATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGCGCAGCTGTCGG 32071 || ||||| || ||||||||||| | || || ||| |||||| | || | | Sbjct 2041252 CATTTACGCATGTTTCAAGAAGAACATTCTCAAG-GACCAGAAGGTCATTGAATTGGCTG 2041310 Query 32072 GCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTG 32131 | ||| | | |||||||| | |||||||| || || | ||||| ||| || || Sbjct 2041311 GTTACATCTCCGAGCAAACTTCGTATCACCATGGTGAAGTTTCGCTGCAGCAAACAATCA 2041370 Query 32132 TCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGAC 32191 || ||| || || | ||| |||||| | || ||| | |||| ||||| || |||| Sbjct 2041371 TCGGCCTCGCACAAACCTTCGTCGGTTCCAACAACGTCAACTGCCTCGAACCCAGTGGAA 2041430 Query 32192 AGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 | ||||| | || |||||||||||| || ||||| || | ||||| ||| Sbjct 2041431 ATTTTGGATCACGTCTCGCCGGTGGCTCAGACGCTGCTAGTCCTCGTTATATC 2041483 >seq4 Length=2394644 Score = 89.7 bits (98), Expect = 6e-13 Identities = 257/388 (66%), Gaps = 13/388 (3%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGG-GTCGTCGTTTGGTCAGCGT 64719 || |||||||| |||||||| || ||||| | | | ||| | || | ||| ||| Sbjct 143448 AAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGCTCAACGT 143507 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || || || || ||||| || ||||| || | || ||| || ||| Sbjct 143508 CTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 143567 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||| | || ||||| ||||| ||||||||||| | || || |||||||| ||||| || Sbjct 143568 TGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGA 143627 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAG----GACAA 64895 |||||||| ||||| || || || | ||| ||| ||| | | | ||| | Sbjct 143628 GACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATTCTCTCACTTGAGGAATCGACCA 143687 Query 64896 ACCATCACATG-GGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAAT 64954 | || ||| | || | | | || ||| || | ||||| ||||||| | || | Sbjct 143688 AGCA-AACAAGTGGTCCAGGA-TGTTATCGTTGA---CGCTGTCAAAATTGAGCAAGAGT 143742 Query 64955 TCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGT 65014 || | || | || || || ||| |||| | |||||| | || |||||| |||| Sbjct 143743 TCCTGACCGAGGCTCTGCCATGTGGTCTTCTTGGCATGAACGCGACCCTGATGAAGCAGT 143802 Query 65015 ATATCGAATTTGTAGCAGATCGCCTGCT 65042 ||||||| || || || ||||| || || Sbjct 143803 ATATCGAGTTCGTTGCCGATCGACTCCT 143830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309865334000