Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq10 158 3e-33
seq25 143 6e-29
seq1 120 7e-22
seq14 100 7e-16
seq16 84.2 5e-11
>seq10
Length=1675152
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || || || || ||||| || || ||||| || |||| || ||
Sbjct 200238 ACGAAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGT 200179
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || |||| ||||||||| |||||||| || || || ||||| || || | ||
Sbjct 200178 TCGACCGTCCTCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCC 200119
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||| || ||||| || ||||| |||||||| || || |||||||||||
Sbjct 200118 CTCCTTGTCTTGAATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAACCTCGAG 200059
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||||||| || ||||| ||||| || || | ||||||
Sbjct 200058 AGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 200017
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| || || ||||| || |||||||| || || ||||| | || |||
Sbjct 200456 AGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCT 200397
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || ||||||||||| ||||| ||||| || || | || ||||| |||
Sbjct 200396 TCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCC 200337
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| ||||| |||||||| || || || | || || |||
Sbjct 200336 TGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTC 200277
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| ||||| || || | ||||||
Sbjct 200276 TTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 200245
Score = 129 bits (142), Expect = 1e-24
Identities = 130/169 (77%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983
|| || |||||||| || || | ||||| | ||||| || ||||||||||| || |||
Sbjct 199826 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 199767
Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043
|| ||||| || ||||| || |||| ||| ||||||||||||||||| || |||||
Sbjct 199766 ATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 199707
Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGA 211092
||||| || || || || ||||| || ||||| |||||||| ||||
Sbjct 199706 TCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTTCCAGTGA 199658
>seq25
Length=449666
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| | ||| ||||| || || ||||| ||||| | ||||| | || ||
Sbjct 296586 AGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTCC 296527
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | || |||||||| || || | || ||||||||
Sbjct 296526 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCT 296467
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || |||||||| ||||| |||
Sbjct 296466 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 296407
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || || || || | ||||||
Sbjct 296406 TTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 296375
>seq1
Length=3506016
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||| || | ||||| |||| ||| || || ||||| ||
Sbjct 194386 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 194445
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||||||||||| ||||| | || ||||| || ||||| || ||||| || |||
Sbjct 194446 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 194505
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| | |||||| ||||| ||||| |||||||| || ||
Sbjct 194506 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 194564
>seq14
Length=1339294
Score = 100 bits (110), Expect = 7e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
||| |||||||||| |||||| ||||| ||||| || ||||| ||||| || |||| ||
Sbjct 355027 CCTACCATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACC 355086
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| || || || || || || ||||| ||||| || | | ||| ||
Sbjct 355087 TTCCTTGTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTGATGGGTGACACTCAAG 355146
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
||| || ||||| || || |||||| |||||
Sbjct 355147 AGTTATTGTCTTGCCGGTCTTAGTCTTCACAAA 355179
>seq16
Length=1288267
Score = 84.2 bits (92), Expect = 5e-11
Identities = 190/279 (68%), Gaps = 14/279 (5%)
Strand=Plus/Plus
Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144
|||| ||||| ||||||||||| | ||||| ||||||||||| ||||| ||
Sbjct 164768 CCAAGATTCTTCTGGTTGCTCTTGCGATTGCAA---GCATCTTTGTAGAGCATGAAAGGG 164824
Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204
|||| |||| || ||| | || ||| || |||||||| ||| || || |||
Sbjct 164825 TTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGATGGTC 164884
Query 178205 TTTTTGGCTTTTCCTTCA--TTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262
|| | || || | ||||| ||||||| |||||| ||||||| || || |
Sbjct 164885 TTGCGACCCTTG--TTGAGCTTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGT 164942
Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGT-CTTCC 178321
|| ||| | || |||||| || ||||| || | ||| |||| | |||| |||
Sbjct 164943 AGCAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTT-- 165000
Query 178322 TTCA-CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359
|||| | || ||||||||||| |||| |||| | |||
Sbjct 165001 TTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGC 165039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159150886127375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |