Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10 158 3e-33 seq25 143 6e-29 seq1 120 7e-22 seq14 100 7e-16 seq16 84.2 5e-11 >seq10 Length=1675152 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || || || ||||| || || ||||| || |||| || || Sbjct 200238 ACGAAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGT 200179 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||| ||||||||| |||||||| || || || ||||| || || | || Sbjct 200178 TCGACCGTCCTCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCC 200119 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || ||||| || ||||| |||||||| || || ||||||||||| Sbjct 200118 CTCCTTGTCTTGAATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAACCTCGAG 200059 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||| || ||||| ||||| || || | |||||| Sbjct 200058 AGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 200017 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| || |||||||| || || ||||| | || ||| Sbjct 200456 AGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCT 200397 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||||||||| ||||| ||||| || || | || ||||| ||| Sbjct 200396 TCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCC 200337 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| |||||||| || || || | || || ||| Sbjct 200336 TGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTC 200277 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | |||||| Sbjct 200276 TTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 200245 Score = 129 bits (142), Expect = 1e-24 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 || || |||||||| || || | ||||| | ||||| || ||||||||||| || ||| Sbjct 199826 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 199767 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || ||||| || ||||| || |||| ||| ||||||||||||||||| || ||||| Sbjct 199766 ATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 199707 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGA 211092 ||||| || || || || ||||| || ||||| |||||||| |||| Sbjct 199706 TCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTTCCAGTGA 199658 >seq25 Length=449666 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | ||| ||||| || || ||||| ||||| | ||||| | || || Sbjct 296586 AGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTCC 296527 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || |||||||| || || | || |||||||| Sbjct 296526 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCT 296467 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || |||||||| ||||| ||| Sbjct 296466 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 296407 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || || | |||||| Sbjct 296406 TTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 296375 >seq1 Length=3506016 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| || | ||||| |||| ||| || || ||||| || Sbjct 194386 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 194445 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||||||||||| ||||| | || ||||| || ||||| || ||||| || ||| Sbjct 194446 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 194505 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| | |||||| ||||| ||||| |||||||| || || Sbjct 194506 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 194564 >seq14 Length=1339294 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| |||||||||| |||||| ||||| ||||| || ||||| ||||| || |||| || Sbjct 355027 CCTACCATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACC 355086 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || || || || || ||||| ||||| || | | ||| || Sbjct 355087 TTCCTTGTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTGATGGGTGACACTCAAG 355146 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||| || ||||| || || |||||| ||||| Sbjct 355147 AGTTATTGTCTTGCCGGTCTTAGTCTTCACAAA 355179 >seq16 Length=1288267 Score = 84.2 bits (92), Expect = 5e-11 Identities = 190/279 (68%), Gaps = 14/279 (5%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| ||||| ||||||||||| | ||||| ||||||||||| ||||| || Sbjct 164768 CCAAGATTCTTCTGGTTGCTCTTGCGATTGCAA---GCATCTTTGTAGAGCATGAAAGGG 164824 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 |||| |||| || ||| | || ||| || |||||||| ||| || || ||| Sbjct 164825 TTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGATGGTC 164884 Query 178205 TTTTTGGCTTTTCCTTCA--TTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262 || | || || | ||||| ||||||| |||||| ||||||| || || | Sbjct 164885 TTGCGACCCTTG--TTGAGCTTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGT 164942 Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGT-CTTCC 178321 || ||| | || |||||| || ||||| || | ||| |||| | |||| ||| Sbjct 164943 AGCAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTT-- 165000 Query 178322 TTCA-CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 |||| | || ||||||||||| |||| |||| | ||| Sbjct 165001 TTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGC 165039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150886127375