Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq16 230 3e-55 seq4 95.1 2e-14 >seq16 Length=1288267 Score = 230 bits (254), Expect = 3e-55 Identities = 1184/1874 (63%), Gaps = 51/1874 (3%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || ||||| || || | || || | || ||||| || |||||||| || || || ||| Sbjct 163775 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 163834 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 || || |||| ||| |||||||||||| || | ||| | | || || ||| Sbjct 163835 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATA 163894 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 || || |||| |||||| ||||| ||||| || || | || || ||||| | | | Sbjct 163895 TGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGACA 163954 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021 | || || | |||||||| | ||| ||| | | ||||||||| | || | | Sbjct 163955 ACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGATG 164014 Query 77022 TTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078 |||| | || || | ||| || || | || || ||||| || | ||| | Sbjct 164015 TTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGAC 164074 Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138 ||||| | | || | | | | ||||| ||| || || | || || || ||| Sbjct 164075 CACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCCA 164134 Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198 | | ||||| || ||| ||||| || || || || | | || ||||| ||| Sbjct 164135 GCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACCC 164194 Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258 || || || | |||| || || ||||| ||||| || | | ||| || | | ||| Sbjct 164195 AAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCCA 164254 Query 77259 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCC 77318 || | |||||| || || || || ||| ||||||||||| ||||| |||| | Sbjct 164255 TGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATTC 164314 Query 77319 CAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGT 77378 || | || | || ||||| || | | || || || | ||||| || || Sbjct 164315 CACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGAGCCTTCGTATGTGGAGTATGGG 164374 Query 77379 CCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAA 77437 |||| || || || || || || | || | | |||||||| || || Sbjct 164375 CCTTGCTCCTTG-GCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGTAAATTGTCTCAAA 164433 Query 77438 AATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATA-- 77495 |||| ||| || || ||| |||| ||| | || || || | | || | || Sbjct 164434 TATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGACTCGAAAGGC--AGGCGAAGGGCTAGG 164491 Query 77496 AAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATT 77555 || |||||||| | |||||||| || | |||||| || || || | | | ||| | Sbjct 164492 AACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGCTGTTC 164551 Query 77556 TTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACT 77615 | ||||| |||| || || || || | ||| || || ||||| | |||| |||||| Sbjct 164552 TGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAACAACA 164611 Query 77616 ACTT---TAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC--TATA----ACA 77666 |||| |||| ||| | || || | || ||| | | || || | || ||| Sbjct 164612 ACTTCGGTAACATCGTGC---AGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCACA 164668 Query 77667 AACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATAT 77726 || ||| || | || || | || || || || ||||||| | | | || Sbjct 164669 AAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTAC 164728 Query 77727 TGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTC 77786 | || ||||| || || ||||| | ||| ||||| ||||| | ||||||||| Sbjct 164729 TCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTC 164788 Query 77787 TTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCG 77846 || |||||| | || || || || || || || | ||||||||| |||| | || Sbjct 164789 TTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCT 164848 Query 77847 ATAATAGATTTCCAGACGACTCTAGCTTTTAT-CATAGATTTGTATCGCCTCTCT----- 77900 | || | | ||| | |||| | | | | ||| || | || | || Sbjct 164849 AGGATGGCATACCAAA--------GCTTCTGTGCCTTGATG-GTCTTGCGACCCTTGTTG 164899 Query 77901 --CTT-TCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATC 77955 ||| ||||| || ||| | |||| || || || || || | ||| ||| | Sbjct 164900 AGCTTCTCATACTTTTCGTAGAGAGCC--TCGAACTCGTCACCGTAGCAGTCAGCCAGGC 164957 Query 77956 CAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 | || ||||| || || ||||||| | ||| || || | | | ||| || ||||| | Sbjct 164958 CGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGA 165017 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 |||||||||| ||||| || || | || ||||| || | | | |||||| || || Sbjct 165018 AGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCAT 165077 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 |||||| || || | ||||| | | || | |||||| || || || || |||| Sbjct 165078 GGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTG 165137 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | | | || || || || || || || ||||| | ||| | || |||||||| | | Sbjct 165138 CGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGA 165197 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 ||| || ||| ||||| | |||||| || || ||||| || || | || || || Sbjct 165198 CTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGG 165257 Query 78256 TTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGC 78315 | || || ||| ||| | || || || || |||||||| || || | || | Sbjct 165258 TGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCAC 165317 Query 78316 AACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAAC 78375 | || | || ||||| || ||||| || ||||||||| |||||| | || || | Sbjct 165318 AGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGC 165377 Query 78376 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAA 78435 | ||||| |||| ||| || || ||||| || | || || || ||||| || | Sbjct 165378 ATGAAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGA 165437 Query 78436 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTA---TGTC-CCATTGA 78491 | | || || | | ||||| |||||||| || || | |||| || | Sbjct 165438 AAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCCAG- 165496 Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 || || || || |||||||| | ||| ||||| |||| ||||| |||| || Sbjct 165497 ---ATACCGACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCA 165553 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 78611 | ||| | | ||| ||| | || |||||||| ||||| ||||| | ||| |||||| Sbjct 165554 AGTTTAAGGAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCT 165613 Query 78612 CTCTCGTAAATAAT 78625 | || || | ||| Sbjct 165614 CGGTCATACACAAT 165627 >seq4 Length=2394644 Score = 95.1 bits (104), Expect = 2e-14 Identities = 214/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATT-TCACAATTCATTCCTATAAG 48028 |||| ||| |||||||| || ||||| ||||||| || | ||||| || | ||| Sbjct 143827 AGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCG-TTCATGCCAAGAAG 143769 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 | ||| |||||||| || || |||||||| || || ||||||| || || || | Sbjct 143768 ACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAAC 143709 Query 48089 CGATGTT--ACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146 || | ||| || | |||||| ||| | ||| || || | | ||| || Sbjct 143708 --ATCCTGGACCACTTGTTTGCTTGGTCGATTCCTCAAGTGAGAGAATAGGAGACAGGCG 143651 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206 |||||| ||| ||||| || |||| || | ||||| || ||||||||||| ||| Sbjct 143650 AAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGC 143591 Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCT 48266 || || ||||| || || | ||| || || | || || | || ||||| || ||| Sbjct 143590 ATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCT 143531 Query 48267 TCTACGGCCGCAAATGC 48283 || ||||| || || || Sbjct 143530 TCGACGGCAGCGAAGGC 143514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668148748000