Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq25 158 3e-33 seq1 156 9e-33 seq10 149 1e-30 seq4 96.9 7e-15 seq14 86.0 1e-11 >seq25 Length=449666 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || ||||| || || || || || || |||||||| |||| Sbjct 296601 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGAT 296542 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || ||||| |||||||| || |||||||| ||| Sbjct 296541 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGG 296482 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| | || || | ||||| ||||| |||| || || Sbjct 296481 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 296422 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||| | || || ||||| |||||||| Sbjct 296421 TCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 296375 >seq1 Length=3506016 Score = 156 bits (172), Expect = 9e-33 Identities = 142/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| ||| || ||||||||||| | ||||| ||||| || ||| Sbjct 194386 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 194445 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || ||||||||||| || || |||||||| |||||||| || | || || | ||| Sbjct 194446 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 194505 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || | |||||| ||||| ||||||| |||||| ||||| Sbjct 194506 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 194564 >seq10 Length=1675152 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || || ||||| | || || || || ||||||||||| | Sbjct 200243 CCACCACGAAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAG 200184 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || ||||| | || || || || ||||| | || || ||||| || Sbjct 200183 AGCGTTCGACCGTCCTCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGG 200124 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| ||||| | |||||| ||||||| || || || | || || Sbjct 200123 ATGCCCTCCTTGTCTTGAATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAACC 200064 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||||||||| || || | ||||| ||||| |||||||| Sbjct 200063 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 200017 Score = 131 bits (144), Expect = 4e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || || ||||||||||| || || || || |||||| Sbjct 199826 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 199767 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || || ||||| ||||| ||||||||||| |||||||| | || ||| | Sbjct 199766 ATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 199707 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 |||||||| ||||||| || || || || ||||| ||||| || || Sbjct 199706 TCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTTCCAGT 199660 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| || || || | || | ||| || || |||||||||||||| Sbjct 200471 CCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 200412 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || || || || || || ||||| | |||||| ||||| || Sbjct 200411 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 200352 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| | |||||| | ||||| ||||| || | || ||| Sbjct 200351 ATACCCTCCTTATCCTGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACT 200292 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || || | ||||| ||||| |||||||| Sbjct 200291 TCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 200245 >seq4 Length=2394644 Score = 96.9 bits (106), Expect = 7e-15 Identities = 152/215 (71%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||| | ||| ||| | || || ||||| | |||||||| || || ||| | Sbjct 143739 GAGTTCCTGACCGAGGCTCTGCCATGTGGTCTTCTTGGCATGAACGCGACCCTGATGAAG 143798 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || |||||||| ||||| || ||||| | | || || || || ||||||| || ||| Sbjct 143799 CAGTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAGGTATAT 143858 Query 230313 AAC---TCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAAC 230369 || ||||| |||||||| || |||||| ||| || || || || || ||| Sbjct 143859 AAGGTGTCCAA---CCCCTTCGACTTCATGGAGAACATCTCTCTTGGCGGCAAGACCAAC 143915 Query 230370 TTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 |||||||| ||||| ||| |||||| || ||||| Sbjct 143916 TTCTTCGAGAAGCGAGTCGCCGATTACCAGAAGGC 143950 >seq14 Length=1339294 Score = 86.0 bits (94), Expect = 1e-11 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || | || || || |||||||||| ||||| ||||| |||||||| ||| Sbjct 355031 CCATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACCTTCC 355090 Query 283002 TTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC-TTCGAGAG 283059 |||||||| || ||| || || || | ||||| ||||| || | | ||| || |||| Sbjct 355091 TTGTCTTGAAT-TTTACTCTTGACATTGTCGATCGTGTCTGATGGGT-GACACTCAAGAG 355148 Query 283060 TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 | || ||||| || ||| |||||| || ||||| ||| Sbjct 355149 TTATTGTCTTGCCGGTCTTAGTCTTCACAAATATTTGC 355186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738194149050