Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq25 158 3e-33
seq1 156 9e-33
seq10 149 1e-30
seq4 96.9 7e-15
seq14 86.0 1e-11
>seq25
Length=449666
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || || || || || ||||| || || || || || || |||||||| ||||
Sbjct 296601 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGAT 296542
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| ||||| || || || ||||| |||||||| || |||||||| |||
Sbjct 296541 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGG 296482
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||||||||| | || || | ||||| ||||| |||| || ||
Sbjct 296481 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 296422
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| ||||| | || || ||||| ||||||||
Sbjct 296421 TCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 296375
>seq1
Length=3506016
Score = 156 bits (172), Expect = 9e-33
Identities = 142/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||||| ||| || ||||||||||| | ||||| ||||| || |||
Sbjct 194386 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 194445
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| ||||||||||| || || |||||||| |||||||| || | || || | |||
Sbjct 194446 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 194505
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| || | |||||| ||||| ||||||| |||||| |||||
Sbjct 194506 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 194564
>seq10
Length=1675152
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| ||||| || || ||||| | || || || || ||||||||||| |
Sbjct 200243 CCACCACGAAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAG 200184
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| || || ||||| | || || || || ||||| | || || ||||| ||
Sbjct 200183 AGCGTTCGACCGTCCTCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGG 200124
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||| ||||| | |||||| ||||||| || || || | || ||
Sbjct 200123 ATGCCCTCCTTGTCTTGAATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAACC 200064
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||||||||||||| || || | ||||| ||||| ||||||||
Sbjct 200063 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 200017
Score = 131 bits (144), Expect = 4e-25
Identities = 129/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || |||||||||||||| | || || ||||||||||| || || || || ||||||
Sbjct 199826 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 199767
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|||| || || ||||| ||||| ||||||||||| |||||||| | || ||| |
Sbjct 199766 ATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 199707
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|||||||| ||||||| || || || || ||||| ||||| || ||
Sbjct 199706 TCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTTCCAGT 199660
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || ||||| || || || | || | ||| || || ||||||||||||||
Sbjct 200471 CCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 200412
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| || || || || || || || || ||||| | |||||| ||||| ||
Sbjct 200411 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 200352
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||| || || ||||| | |||||| | ||||| ||||| || | || |||
Sbjct 200351 ATACCCTCCTTATCCTGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACT 200292
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || || ||||| || || | ||||| ||||| ||||||||
Sbjct 200291 TCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 200245
>seq4
Length=2394644
Score = 96.9 bits (106), Expect = 7e-15
Identities = 152/215 (71%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252
|||||| | ||| ||| | || || ||||| | |||||||| || || ||| |
Sbjct 143739 GAGTTCCTGACCGAGGCTCTGCCATGTGGTCTTCTTGGCATGAACGCGACCCTGATGAAG 143798
Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312
|| |||||||| ||||| || ||||| | | || || || || ||||||| || |||
Sbjct 143799 CAGTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAGGTATAT 143858
Query 230313 AAC---TCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAAC 230369
|| ||||| |||||||| || |||||| ||| || || || || || |||
Sbjct 143859 AAGGTGTCCAA---CCCCTTCGACTTCATGGAGAACATCTCTCTTGGCGGCAAGACCAAC 143915
Query 230370 TTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403
|||||||| ||||| ||| |||||| || |||||
Sbjct 143916 TTCTTCGAGAAGCGAGTCGCCGATTACCAGAAGGC 143950
>seq14
Length=1339294
Score = 86.0 bits (94), Expect = 1e-11
Identities = 117/158 (74%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001
||||| || | || || || |||||||||| ||||| ||||| |||||||| |||
Sbjct 355031 CCATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACCTTCC 355090
Query 283002 TTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC-TTCGAGAG 283059
|||||||| || ||| || || || | ||||| ||||| || | | ||| || ||||
Sbjct 355091 TTGTCTTGAAT-TTTACTCTTGACATTGTCGATCGTGTCTGATGGGT-GACACTCAAGAG 355148
Query 283060 TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097
| || ||||| || ||| |||||| || ||||| |||
Sbjct 355149 TTATTGTCTTGCCGGTCTTAGTCTTCACAAATATTTGC 355186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738194149050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |