Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02-
10] 75 sequences; 42,602,674 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq25 132 1e-25
seq1 122 2e-22
seq10 118 3e-21
seq14 102 2e-16
>seq25
Length=449666
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| || || || || || ||||||||||||||||| || |||
Sbjct 296378 CAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 296437
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| || ||||| || || ||||| || ||||| ||
Sbjct 296438 ACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAACAG 296497
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||||||||| || |||||||| || || | || || | ||||| ||| |
Sbjct 296498 CGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAACATT 296557
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || |||| || ||
Sbjct 296558 CAGAAGGAGTCGACTTTGCACCTGGT 296583
>seq1
Length=3506016
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| ||||| || || || || ||||| | ||||| || ||| ||||| ||
Sbjct 194565 TTTCGTGAAGACTCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGAT 194506
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || || || || || || || || || || |||||||||||||| |||||| |
Sbjct 194505 CGACAATGTGAAGTCCAAAATCCAAGATAAGGAGGGCATCCCTCCGGACCAACAACGATT 194446
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|| ||||||||||||||| | || ||||| | |||||| | || || ||| |||| ||
Sbjct 194445 GATTTTCGCCGGAAAACAGTTGGAGGATGGCCGAACTCTTTCTGACTACAACATCCAGAA 194386
>seq10
Length=1675152
Score = 118 bits (130), Expect = 3e-21
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| ||||| || || || | || || || || |||
Sbjct 200248 CAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCTGAC 200307
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || ||||||||||| || || || ||||| || |||||||||
Sbjct 200308 ACAATCGACAACGTAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAA 200367
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || || ||||| ||||| || | || || ||| || ||| ||
Sbjct 200368 CGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAACATC 200427
Query 178104 CAAAAAGAATCAACACTGCA 178123
|| || || || || || ||
Sbjct 200428 CAGAAGGAGTCTACGCTCCA 200447
>seq14
Length=1339294
Score = 102 bits (112), Expect = 2e-16
Identities = 120/160 (75%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGC-TCAGA 177982
||||| || ||||| ||| || || || || || || || ||| || | | |||||
Sbjct 355185 CAAATATTTGTGAAGACTAAGACCGGCAAGACAATAACTCTTGAG-TGTCACCCATCAGA 355127
Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
||| ||||| || ||||| || ||||| ||||| ||||| || || || ||||||||
Sbjct 355126 CACGATCGACAATGTCAAGAGTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAGCA 355067
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG 178082
|||||| ||||| || ||||| ||| | |||||||| |||
Sbjct 355066 ACGACTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTAGG 355027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730043289550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |