Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq25 152 5e-32 seq10 113 4e-20 >seq25 Length=449666 Score = 152 bits (168), Expect = 5e-32 Identities = 174/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || |||||||| | |||||| |||| || ||||||||||||||| || || | Sbjct 296603 CGCCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAG 296544 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | ||||| || |||| |||||||||||||||||||| |||| ||||||||||| | | Sbjct 296543 ATAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCG 296484 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTC 41811 | | || ||||||||| ||| || ||| || | || | |||||| ||||| Sbjct 296483 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTC 296426 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| | || || || || ||||| || || || ||||| ||||||||| Sbjct 296425 CACCTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATG 296374 >seq10 Length=1675152 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || ||||| || || ||||||||||||||| ||||| || Sbjct 200244 GCCACCACGAAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGA 200185 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| || | ||||||||| ||||| || || ||||| ||||| | || Sbjct 200184 GAGCGTTCGACCGTCCTCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGG 200125 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| | ||| | || | | ||| | | || ||| ||||| | Sbjct 200124 GATGCCCTCCTTGT-CTTGAATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAA 200066 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| || || || || ||||| ||||| |||||||| Sbjct 200065 CCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 200017 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| |||||||||||||| || | || |||||||||||||| || || Sbjct 199826 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 199767 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 ||||||||||| ||||| | ||||| | |||||||||| ||| || Sbjct 199766 ATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTT 199720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303566590000