Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq12 242 4e-59 seq3 109 7e-19 >seq12 Length=4789767 Score = 242 bits (268), Expect = 4e-59 Identities = 1183/1873 (63%), Gaps = 33/1873 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| || ||||| || | || | || ||||| || ||||||||||| || || ||| Sbjct 3334009 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 3334068 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 ||||| |||| ||| |||||||| || || | ||| | |||| ||| ||| Sbjct 3334069 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATA 3334128 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 ||||| |||| || ||| ||||| |||||||| || | ||| |||||||| | | Sbjct 3334129 TGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGACA 3334188 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 | || |||| |||||||| | ||| || || | || |||||| | || | | Sbjct 3334189 ACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGATG 3334248 Query 53048 TTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 |||| | ||||| | || || || | || || | ||||| || | ||| | Sbjct 3334249 TTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGAC 3334308 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || || | || | | | | ||||| || || || || || || || ||| Sbjct 3334309 CACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCCA 3334368 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | | ||||| || ||| ||||| || ||||| || | |||| || || ||| Sbjct 3334369 GCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACCC 3334428 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 || || || | ||| || || ||||| ||||| || | | ||| || | || || Sbjct 3334429 AAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCCA 3334488 Query 53285 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 53344 | | |||||| || || || | | |||| | ||||||||| || || || Sbjct 3334489 TGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATTC 3334548 Query 53345 NNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCGTA 53400 || ||||| || | ||| || | | ||| | ||||| ||| Sbjct 3334549 CACATGTCAAACTGCAGAATGCCTTGAGATACAGGAG----AGCCTTCGTATGTGGAGTA 3334604 Query 53401 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460 ||| |||| || || || || || || | || | | ||||| || || Sbjct 3334605 TGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGTAAATTGTCTC 3334664 Query 53461 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGA- 53518 || |||| ||| || || ||| |||| || ||| | || || || | ||| | Sbjct 3334665 AAATATCTGCTTGTTCAGCTCTCGTGCCTC-AGGAGACTCGAAAGGC-AGGCGAAGGGCT 3334722 Query 53519 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 53578 | ||||| ||||| | || ||||| || | ||| || || || || | | | || | Sbjct 3334723 AGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGCTG 3334782 Query 53579 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACA 53638 | | ||||| |||| || || || || | || || || ||||| | ||||| ||| Sbjct 3334783 TTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAACA 3334842 Query 53639 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC----TATTACAAA 53694 | |||| | ||||| | ||| || | || ||| | || || || | || | Sbjct 3334843 ACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCACA 3334902 Query 53695 CATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TA 53751 | | ||| || | || |||| || || ||||| ||||||| | | ||| || Sbjct 3334903 AAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGC-GCAGTA 3334961 Query 53752 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 53811 | || ||||| ||||| ||||| | |||||| || | ||| | || || || Sbjct 3334962 CTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCT 3335021 Query 53812 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTC 53871 ||| || || ||||| || || || ||||| || | || |||||| |||||| || Sbjct 3335022 CTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTC 3335081 Query 53872 TATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT-TTCTCTTT 53930 || || || | ||| | | ||||| || | ||| | ||| || || Sbjct 3335082 TAGGATGGCATACCAAAGCTTCTGTGCCTTGATGGTC---TTGCGACCCTTGTTGAGCTT 3335138 Query 53931 CGTATAGT----GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986 | ||| | ||| | | | || |||||||| || | | ||| || ||| Sbjct 3335139 CTCATACTTTTCGTAGAGAGCC--TCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGA 3335196 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 ||||| | |||||||||| | ||| || |||| | | || || ||||| |||||| Sbjct 3335197 CATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAGA 3335256 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 ||||||||||| || || | || ||||| | | | | ||| || || || ||| Sbjct 3335257 TCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTC 3335316 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 ||| || || | |||| | | | || | |||||| || || | ||| || | | | Sbjct 3335317 TTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAA 3335376 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | || || || ||||| || || ||||| | || | ||| |||||||| | |||| | Sbjct 3335377 GCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCGC 3335436 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 | ||| ||||| | ||| ||||| | |||||||| || | ||| || || ||||| Sbjct 3335437 AGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCA 3335496 Query 54287 CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 || ||| || || || || || || ||||| || ||||| | ||| || Sbjct 3335497 CGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTC 3335556 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 || | || || || |||||||| || || |||||| |||||| | ||| || || | Sbjct 3335557 TTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAA 3335616 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 |||| ||| || || |||||||| || | ||| || || || || || || | Sbjct 3335617 GACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAAC 3335676 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCT 54526 || || | | ||||| || || || || || | || | || || Sbjct 3335677 TTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCCAGATACCG 3335736 Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGC 54586 || || |||||||| | ||||||||| |||| |||||||||||| | | ||| || Sbjct 3335737 ACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCAAGTTTAAGG 3335796 Query 54587 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 54646 | ||||||| | || |||||||| ||||| ||||| | ||| |||||||| || || Sbjct 3335797 AGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCTCGGTCATAC 3335856 Query 54647 ATAATAACTGAGT 54659 | ||| | |||| Sbjct 3335857 ACAATGGCGGAGT 3335869 >seq3 Length=2371949 Score = 109 bits (120), Expect = 7e-19 Identities = 295/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || ||||| || | || || || ||||| || || || || || | | || || || Sbjct 2245039 TTCTGGTAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTC 2245098 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAA-AT 23962 |||||||| ||| | || |||| || ||||| | ||| | | |||| || | Sbjct 2245099 TCCATGAAGTCGAAGGGGTTGGACACCTTATATAC-CTTCTCGTTGCCAAGAGCGACCAG 2245157 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATT-TCACAATTCATTCCTATAA 24021 | || ||| || || ||||| ||||| ||||||| || | ||||| || | || Sbjct 2245158 GAGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCG-TTCATGCCAAGAA 2245216 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | | ||| |||||| | || || || ||||| ||||| ||| ||||| |||| Sbjct 2245217 GACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAA 2245276 Query 24082 TAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 | || | || || || || ||| ||| | || || || | | ||| || Sbjct 2245277 CA--TCCTGGACCACTTGTTTGCTTGGTCGATTCCTCAAGTGAGAGAATAGGAGACAGGC 2245334 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 |||||| || ||||||||||||| || | |||||||| || ||||| || || Sbjct 2245335 GAAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGG 2245394 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259 ||| ||||||||||| || | ||| || ||||| ||||| | || ||||| || || Sbjct 2245395 CATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACC 2245454 Query 24260 TTCTACTGCCGCAAAGGCAATAAG 24283 ||| || || || ||||||| ||| Sbjct 2245455 TTCGACGGCAGCGAAGGCAACAAG 2245478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721332825280