Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3 167 2e-36
seq33 138 1e-27
seq35 122 9e-23
seq2 96.9 4e-15
>seq3
Length=2371949
Score = 167 bits (184), Expect = 2e-36
Identities = 210/285 (74%), Gaps = 5/285 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| |||||||| ||||| |||||||||| |||||| | || |||
Sbjct 2245942 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 2245883
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| ||| ||| | | || ||||| ||||| | ||||||
Sbjct 2245882 TCCAAGGATCTTCACGATTGGAACAACAAGATCAACGACGACGAGAAATACTTCATCTCA 2245823
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | ||||||| |||||||| || |||||||||||||||||||| |||||| |
Sbjct 2245822 CACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGAGA 2245763
Query 116813 TTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| ||| ||||| ||| | | ||||| || |||||||||||||| ||||| ||
Sbjct 2245762 TTCAG-CAGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATTATGAT 2245704
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
||||||| | |||||||| | || || ||||||||||| ||
Sbjct 2245703 GGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACACATA 2245659
Score = 140 bits (154), Expect = 3e-28
Identities = 312/462 (68%), Gaps = 5/462 (1%)
Strand=Plus/Minus
Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035
||| | ||||||| || ||||| | || ||||| ||| || || | ||||||
Sbjct 2245543 TCAGAAAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGCTC 2245484
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
| || || || |||||||| |||||||| || ||||||| || || || |||
Sbjct 2245483 AACGTCTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCA 2245424
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| || ||| | ||||| || ||||||||||| || || || ||| ||||||||||||||
Sbjct 2245423 TCTTCTGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCT 2245364
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC 117215
| | ||||||||||| ||| || || |||||| | || ||| || ||| | | |
Sbjct 2245363 CGCGAGACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATTCTCTCACTTGAGGAATC 2245304
Query 117216 GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275
|||| ||| ||| ||| | || ||||| ||| || ||||| |
Sbjct 2245303 GACCAAGCAAACAAGTGGTCCAGGATGTTATCGTTGACGCTGTCAAAATTGAGCAAGAGT 2245244
Query 117276 TCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCA 117333
|||| ||||| || ||||| ||| |||| || || | || |||| | |||| |||
Sbjct 2245243 TCCTGACCGAGGCTCTGCCATGTG-GTCTTCTTGGCATGAA-CGCGACCCTGATGAAGCA 2245186
Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAA 117393
|| ||||||||||| ||||| | || ||| ||| || | | || ||| || ||
Sbjct 2245185 GTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAGGTATATAA 2245126
Query 117394 CACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTGG 117434
| ||||||| | ||||| ||| | |||||| |||||
Sbjct 2245125 GGTGTCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGG 2245084
>seq33
Length=3634720
Score = 138 bits (152), Expect = 1e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || ||||| |||| || || | ||
Sbjct 1474474 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 1474415
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| || |||| ||||| ||||||||||| | |||||
Sbjct 1474414 GATACCATCGATAACG-TAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCA 1474356
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| |||||||||| ||||||||| ||| |||| |||| || || ||| ||||||||
Sbjct 1474355 GCAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAA 1474296
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| ||||||||| | || || ||||| ||
Sbjct 1474295 CATTCAGAAGGAGTCTACCCTCCATCTCGT 1474266
Score = 132 bits (146), Expect = 5e-26
Identities = 146/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || |||||||| || ||||| ||||| ||||||||| | || ||||| | |
Sbjct 1474702 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 1474643
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| || || | ||||| ||||| |||||| | |||||
Sbjct 1474642 GATACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 1474584
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||| | |||| ||| ||||| ||||| || || | || |||||| |||||||||
Sbjct 1474583 GCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAA 1474524
Query 40869 CATCCAGAAGGA 40880
||||||||||||
Sbjct 1474523 CATCCAGAAGGA 1474512
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || ||||| || | || || || | |
Sbjct 1474246 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCT 1474187
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || |||| || || ||||| ||||| | |||||
Sbjct 1474186 GACACAATCGACAACG-TAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACCA 1474128
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| ||| || || |||||||| |||| |||||||| | |||||||||
Sbjct 1474127 GCAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 1474068
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| | ||||| || |||| | || || | ||||||
Sbjct 1474067 CATCCAGAAGGAGTCTACGCTCCACTTAGTCCTCCGTCTGCGCGGCGGC 1474019
Score = 102 bits (112), Expect = 8e-17
Identities = 137/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| || || ||||||||| | || || || | | || | | | |||| |||||
Sbjct 1474908 TCACTGGAAAGACCATCACCCTTGAGGTGGAGTCTTCGGATACTATCGACAACG-TCAAG 1474850
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| ||||| || ||| | |||||||| || || |||| || |||
Sbjct 1474849 TCGAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGC 1474790
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || || | || |||||| |||||||||||||||||||||| |||| ||
Sbjct 1474789 AAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTT 1474730
Query 40891 CATCTAGT 40898
||||| ||
Sbjct 1474729 CATCTCGT 1474722
>seq35
Length=2560152
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| || ||||| || || |||||| |||| || || | ||
Sbjct 153333 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 153274
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| ||||||||||| | |||||
Sbjct 153273 GACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAA 153214
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | |||| ||| ||||| ||||| || |||| || ||||| || ||||||
Sbjct 153213 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAAC 153154
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| ||||||||| | || |||| || ||| ||||
Sbjct 153153 ATTCAGAAGGAGTCGACTTTGCACCTGGTGCTGCG 153119
>seq2
Length=5100555
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| |||||||| | || ||||| || | |||| |
Sbjct 3306558 TTCGTGAAGACTCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 3306617
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | | ||| ||||| | || || ||||||||||| ||||||| |||||| |
Sbjct 3306618 GACAATGTGAAGTCCAAAATCCAAGATAAGGAGGGCATCCCTCCGGACCAACAACGATTG 3306677
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|| | ||| || |||||| |||| || | || || || ||||||||||||||||||
Sbjct 3306678 ATTTTCGCCGGAAAACAGTTGGAGGATGGCCGAACTCTTTCTGACTACAACATCCAGAAG 3306737
Query 40879 G 40879
|
Sbjct 3306738 G 3306738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218968151360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |