Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 167 2e-36 seq33 138 1e-27 seq35 122 9e-23 seq2 96.9 4e-15 >seq3 Length=2371949 Score = 167 bits (184), Expect = 2e-36 Identities = 210/285 (74%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||||| ||||| |||||||||| |||||| | || ||| Sbjct 2245942 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 2245883 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||| ||| | | || ||||| ||||| | |||||| Sbjct 2245882 TCCAAGGATCTTCACGATTGGAACAACAAGATCAACGACGACGAGAAATACTTCATCTCA 2245823 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | ||||||| |||||||| || |||||||||||||||||||| |||||| | Sbjct 2245822 CACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGAGA 2245763 Query 116813 TTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||| ||||| ||| | | ||||| || |||||||||||||| ||||| || Sbjct 2245762 TTCAG-CAGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATTATGAT 2245704 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||||||| | |||||||| | || || ||||||||||| || Sbjct 2245703 GGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACACATA 2245659 Score = 140 bits (154), Expect = 3e-28 Identities = 312/462 (68%), Gaps = 5/462 (1%) Strand=Plus/Minus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 ||| | ||||||| || ||||| | || ||||| ||| || || | |||||| Sbjct 2245543 TCAGAAAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGCTC 2245484 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || || |||||||| |||||||| || ||||||| || || || ||| Sbjct 2245483 AACGTCTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCA 2245424 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | || ||| | ||||| || ||||||||||| || || || ||| |||||||||||||| Sbjct 2245423 TCTTCTGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCT 2245364 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC 117215 | | ||||||||||| ||| || || |||||| | || ||| || ||| | | | Sbjct 2245363 CGCGAGACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATTCTCTCACTTGAGGAATC 2245304 Query 117216 GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275 |||| ||| ||| ||| | || ||||| ||| || ||||| | Sbjct 2245303 GACCAAGCAAACAAGTGGTCCAGGATGTTATCGTTGACGCTGTCAAAATTGAGCAAGAGT 2245244 Query 117276 TCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCA 117333 |||| ||||| || ||||| ||| |||| || || | || |||| | |||| ||| Sbjct 2245243 TCCTGACCGAGGCTCTGCCATGTG-GTCTTCTTGGCATGAA-CGCGACCCTGATGAAGCA 2245186 Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAA 117393 || ||||||||||| ||||| | || ||| ||| || | | || ||| || || Sbjct 2245185 GTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAGGTATATAA 2245126 Query 117394 CACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTGG 117434 | ||||||| | ||||| ||| | |||||| ||||| Sbjct 2245125 GGTGTCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGG 2245084 >seq33 Length=3634720 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| |||| || || | || Sbjct 1474474 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 1474415 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| ||||||||||| | ||||| Sbjct 1474414 GATACCATCGATAACG-TAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCA 1474356 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| ||||||||| ||| |||| |||| || || ||| |||||||| Sbjct 1474355 GCAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAA 1474296 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || ||||| || Sbjct 1474295 CATTCAGAAGGAGTCTACCCTCCATCTCGT 1474266 Score = 132 bits (146), Expect = 5e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || ||||| ||||| ||||||||| | || ||||| | | Sbjct 1474702 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 1474643 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| ||||| |||||| | ||||| Sbjct 1474642 GATACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 1474584 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||| ||||| ||||| || || | || |||||| ||||||||| Sbjct 1474583 GCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAA 1474524 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 1474523 CATCCAGAAGGA 1474512 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||| || | || || || | | Sbjct 1474246 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCT 1474187 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| || || ||||| ||||| | ||||| Sbjct 1474186 GACACAATCGACAACG-TAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACCA 1474128 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| || || |||||||| |||| |||||||| | ||||||||| Sbjct 1474127 GCAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 1474068 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || |||| | || || | |||||| Sbjct 1474067 CATCCAGAAGGAGTCTACGCTCCACTTAGTCCTCCGTCTGCGCGGCGGC 1474019 Score = 102 bits (112), Expect = 8e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| || || ||||||||| | || || || | | || | | | |||| ||||| Sbjct 1474908 TCACTGGAAAGACCATCACCCTTGAGGTGGAGTCTTCGGATACTATCGACAACG-TCAAG 1474850 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||| || ||| | |||||||| || || |||| || ||| Sbjct 1474849 TCGAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGC 1474790 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | || |||||| |||||||||||||||||||||| |||| || Sbjct 1474789 AAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTT 1474730 Query 40891 CATCTAGT 40898 ||||| || Sbjct 1474729 CATCTCGT 1474722 >seq35 Length=2560152 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || ||||| || || |||||| |||| || || | || Sbjct 153333 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 153274 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||||||||| | ||||| Sbjct 153273 GACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAA 153214 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| ||||| ||||| || |||| || ||||| || |||||| Sbjct 153213 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAAC 153154 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||||||| | || |||| || ||| |||| Sbjct 153153 ATTCAGAAGGAGTCGACTTTGCACCTGGTGCTGCG 153119 >seq2 Length=5100555 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| |||||||| | || ||||| || | |||| | Sbjct 3306558 TTCGTGAAGACTCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 3306617 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | | ||| ||||| | || || ||||||||||| ||||||| |||||| | Sbjct 3306618 GACAATGTGAAGTCCAAAATCCAAGATAAGGAGGGCATCCCTCCGGACCAACAACGATTG 3306677 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| || |||||| |||| || | || || || |||||||||||||||||| Sbjct 3306678 ATTTTCGCCGGAAAACAGTTGGAGGATGGCCGAACTCTTTCTGACTACAACATCCAGAAG 3306737 Query 40879 G 40879 | Sbjct 3306738 G 3306738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218968151360