Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq35 114 1e-20 seq33 111 1e-19 seq2 86.0 5e-12 >seq35 Length=2560152 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| |||| | || ||||| ||| | || ||||| || |||||||||||||| Sbjct 153107 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGAT 153166 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||||||||| || || ||| |||| | ||||| || || || || Sbjct 153167 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGG 153226 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||||||| || || || || | |||| |||||| | ||| ||| Sbjct 153227 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 153286 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| ||| | || || || || || ||||| || || ||||||||| Sbjct 153287 TCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATG 153334 >seq33 Length=3634720 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || || || |||||||| ||| | || || ||||||| Sbjct 1474494 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG 1474553 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| | |||||||| || || || || ||||||||||| Sbjct 1474554 AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1474613 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| |||| ||||||||| | ||| | || ||| Sbjct 1474614 ATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTCTTG 1474673 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || ||||| || |||||||| Sbjct 1474674 CCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| || ||||||||||| || | || || ||||| | ||| Sbjct 1474272 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCCAACTGC 1474331 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| ||||||| |||||||| || || || ||||||||||||||| ||| || Sbjct 1474332 TTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTG 1474391 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| ||| || | ||| ||||||| || | ||| |||||||| Sbjct 1474392 GACTTTACGTTATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGTG 1474451 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 1474452 AGGGTCTTGACGAAGATCTGCAT 1474474 >seq2 Length=5100555 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||| || |||||| | ||||||||| ||| | || Sbjct 3306736 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 3306677 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | || || || || ||||| ||||||||||| ||| ||||| || || | ||| Sbjct 3306676 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 3306617 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | || | || ||||| |||||||| || || ||| Sbjct 3306616 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAA 3306557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830209656912