Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq33 93.3 5e-14
>seq33
Length=3634720
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| || | || || || |||| || | |||||| || |||||
Sbjct 1474283 CTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCCAACTGCTTGCCCGCGAA 1474342
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
||||||||||||||||| | || | || |||||||| | ||| | || | || |
Sbjct 1474343 GATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGT-CTTGAATCTTGGACTTTACGT 1474401
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || ||| || || || |||| ||||| || ||||| || || ||||| |
Sbjct 1474402 TATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGA 1474461
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 1474462 CGAAGATCTGCAT 1474474
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || ||| || || |||| || |||||||||||||||||
Sbjct 1474055 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 1474114
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || || |||||||| | || | | |||||| ||| ||| | || | | |||
Sbjct 1474115 GATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCC-TGAATCTTGGACTTTACGT 1474173
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| ||| || || || | ||| ||||| || || || || ||||| |
Sbjct 1474174 TGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGA 1474233
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 1474234 CGAAGATCTGCAT 1474246
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| || | || || || | || || |||||||| || |||||
Sbjct 1474512 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 1474571
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| | |||||||||||| | || | | |||||||||| ||| || |||| |||
Sbjct 1474572 ATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTT 1474630
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | || || || || || || | |||||||| ||||| || || ||||||||
Sbjct 1474631 GTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTTAC 1474690
Query 43172 AAAGATTTGCAT 43183
||||| |||||
Sbjct 1474691 GAAGATCTGCAT 1474702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817342682080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |