Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq33 123 2e-23
seq35 111 1e-19
seq2 84.2 1e-11
>seq33
Length=3634720
Score = 123 bits (136), Expect = 2e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||| || ||| || |||| |||||||||||||| |||||
Sbjct 1474284 TCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCCAACTGCTTGCCCGCGAAG 1474343
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
||||| ||||||||||| || | || ||||||||| ||||| ||||| |
Sbjct 1474344 ATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTGGACTTTACGTTA 1474403
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | ||||| || || || || | ||||| || ||||||||||| || || ||
Sbjct 1474404 TCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACG 1474463
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 1474464 AAGATCTGCAT 1474474
Score = 122 bits (134), Expect = 6e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||| ||| | |||| ||| ||||| |||||||||||||| || ||| | ||
Sbjct 1474491 AGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 1474550
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| ||||| || | ||||||||||| ||| | | |||||||||
Sbjct 1474551 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1474610
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | ||| | || ||||| || | ||||||||
Sbjct 1474611 TGGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTC 1474670
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||||||||| || || || |||||||||||
Sbjct 1474671 TTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||||||||| | || || | ||| | ||| || ||||| |||||||||||| |
Sbjct 1474020 CCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1474079
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| |||| |||||| || ||||| || || || |||||||| ||
Sbjct 1474080 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 1474139
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||| || ||||| ||||| | | | || | || | ||| || ||
Sbjct 1474140 ATACCCTCCTTATCCTGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACT 1474199
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||| ||||| || |||||||| || || || |||||||||||
Sbjct 1474200 TCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474246
>seq35
Length=2560152
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | |||||||||||| ||||| || ||||| |||||||| || ||
Sbjct 153107 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGAT 153166
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281
|| ||| |||| || | ||||||||| ||||| || | ||||| ||||| | ||||
Sbjct 153167 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGG 153226
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| ||||| ||| | || | | || | |||| || || ||
Sbjct 153227 -ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 153285
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || || || || || ||||| || |||||||||||
Sbjct 153286 CTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 153333
>seq2
Length=5100555
Score = 84.2 bits (92), Expect = 1e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| ||||||||||| || || ||| | || |||||||| || || ||||||||
Sbjct 3306736 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 3306677
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
| || || ||||| || | || |||||| || || || ||| | || | |
Sbjct 3306676 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 3306617
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|||| || | || ||||| |||| |||||||| ||||| || ||||| ||||| ||
Sbjct 3306616 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 3306558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071858252160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |