Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq12 111 3e-19 >seq12 Length=4789767 Score = 111 bits (122), Expect = 3e-19 Identities = 593/923 (64%), Gaps = 52/923 (6%) Strand=Plus/Minus Query 248832 TTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAAT 248891 ||||||||| | |||| ||| || ||||| ||| |||||||||||||||| || ||| Sbjct 3335823 TTTCAAAACTTTAGAGAGATCCTACCTCCTTAAACTTGATGGCAAGATCGTTGAGCGACC 3335764 Query 248892 TCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGT 248948 ||||||||| | ||||| || |||||||| || | || |||| | ||| | || Sbjct 3335763 CCAGCACATGATCATGCGTGTTGCTGTCGGTAT---CTGGGGAGACAATGTTGAGCGAGT 3335707 Query 248949 GCTCGAGACGTACACCGGAATG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCT 249007 | || || |||| | ||| | | | | | ||||||||| | || || |||| Sbjct 3335706 CATTGAAACCTACAACTTGATGTCCAGCAAG-TTTTTCACACATGCCTCGCCAACCCTCT 3335648 Query 249008 TCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACG 249067 |||| || || ||| | ||| ||| || ||||| || | | |||| | || | Sbjct 3335647 TCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTAGTCGACATGAAGGATG 3335588 Query 249068 ACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCG 249124 || | || |||||||| ||||| || | |||| || | ||| || || | | Sbjct 3335587 ACAGCATTGAGGGCATTTACGACACCCTCA---AGACCTGTGCAATGATCTCCAAGATGG 3335531 Query 249125 CGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTA 249184 | || || || || ||| | || | ||||| || | ||||| |||||| || | Sbjct 3335530 CTGGTGGTATTGGCCTCAACATCCACCGTATCCGTGCCACCGGTTCATACATCGCGGGCA 3335471 Query 249185 CAAATGGGGTCAGT---GATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC----C 249237 | ||||| || | | ||| || | ||| | || ||| ||| | ||| | Sbjct 3335470 CCAATGG---CACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTCAATAACACTGCTC 3335414 Query 249238 GCCAGGTTCATCAACCAGGC--CGGGCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAG 249295 | | || ||||| ||| | ||||| | || | ||||| || || | || Sbjct 3335413 GTTATGTGGATCAAGGTGGCAACAAGCGCCCA---GGCGCTTTCGCAATCTACCTTGAGC 3335357 Query 249296 TGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCA 249355 ||||| || || | || |||||| ||||| | ||||||| | ||||| || Sbjct 3335356 CTTGGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAG 3335297 Query 249356 TGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCA 249415 | | || ||||| |||||| || ||||||| | | || | |||||| || || Sbjct 3335296 TTCGCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTG 3335237 Query 249416 AGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCG-ACGCCCCGGACCTCATCGATCTA 249474 | ||||||||||||| || | | ||| || | | ||||| ||| || || Sbjct 3335236 AAAAGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGG-CCTGGCTGA-CTG 3335179 Query 249475 C-ACGGCGCCGACTTCGACCAAGC-CTATAAGAA----ATACGAATC-CAAC-GGCATCG 249526 | |||| | ||| |||| | || || || ||| || ||| | |||| | || Sbjct 3335178 CTACGGTGACGAGTTCG---AGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGGGTC- 3335123 Query 249527 GCAAGACAATCAAGGCTCGGACCCTT---TTTGCGAAGGTGGTGGAGTCCCAGATAGAGA 249583 ||||||| |||||||| | || ||| | ||| | | | ||| |||||| || | Sbjct 3335122 GCAAGACCATCAAGGCACAGAAGCTTTGGTATGCCA---TCCTAGAGGCCCAGACTGAAA 3335066 Query 249584 CAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCAT 249642 | || || | | || | | |||||| || ||||| |||||| ||||| | || Sbjct 3335065 C-CGGAAACCCTTTCATGCTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAAT 3335007 Query 249643 CTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAG 249702 ||||| ||||||||| || |||||||| | ||| | || | |||| || || Sbjct 3335006 CTTGGCACCATCCGCAGCTCCAATCTCTGCACGGAGATCATCGAGTACTGCGCCCCCGAT 3334947 Query 249703 GAGATTGCCGTCTGCAACCTGGC 249725 ||| | |||||||||||| |||| Sbjct 3334946 GAGGTCGCCGTCTGCAACTTGGC 3334924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765904725248