Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq35 104 2e-17 seq33 104 2e-17 seq2 96.9 3e-15 >seq35 Length=2560152 Score = 104 bits (114), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| || |||||||||||||||||| || || || |||| || Sbjct 153125 ACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTCCTCG 153184 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||||||||| || || | ||||||||||| Sbjct 153185 AGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 153244 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| || ||||| Sbjct 153245 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTC 153304 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 ||||| || || || || ||||| |||||| |||||| Sbjct 153305 CCCGTAAGGGTTTTGACGAAGATCTGCATGATTGCCT 153341 >seq33 Length=3634720 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || ||||| ||||| ||||||||| |||||||||||| |||| |||| |||| ||| Sbjct 1474038 ACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 1474097 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | || || ||||| || || | ||||||||| ||| | Sbjct 1474098 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGA 1474157 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| ||| || |||| ||||| ||||| Sbjct 1474158 ATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTT 1474217 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| || ||||| |||||| Sbjct 1474218 CCGGTGAGGGTCTTGACGAAGATCTGCATG 1474247 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCG 45184 |||||||| || || |||||||| |||||||||||| || | ||| ||| ||| Sbjct 1474494 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG 1474553 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| ||||| ||||| ||||| || || | |||||||||||| Sbjct 1474554 ---AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1474610 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | | ||| | ||| ||||| | ||| || ||| Sbjct 1474611 TGGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTC 1474670 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || ||||| || ||||| ||||| Sbjct 1474671 TTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702 >seq2 Length=5100555 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || || | || |||| |||||||||||||| | Sbjct 3306738 CCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAA 3306679 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 |||| || |||||||| ||||| | |||||||| || ||||| ||| || Sbjct 3306678 TCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGT 3306619 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | ||||| ||| ||||||| || || ||||||||||||||||||||||| | Sbjct 3306618 CGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGA 3306559 Query 45327 A 45327 | Sbjct 3306558 A 3306558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075026660756