Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12 358 6e-94 seq3 120 3e-22 seq33 98.7 9e-16 >seq12 Length=4789767 Score = 358 bits (396), Expect = 6e-94 Identities = 1218/1885 (65%), Gaps = 29/1885 (2%) Strand=Plus/Plus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || ||||| |||| || || | || || || || || ||||| Sbjct 3333997 TCTTGGTCAACGGTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATT 3334056 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||| ||||| | |||||| || ||||| || || | || || | || Sbjct 3334057 CCGGTCTTAAGACCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTC 3334116 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | ||| | | || || |||||| |||||| || || || || || ||||| Sbjct 3334117 GGGTCTTTCATATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCA 3334176 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | | | |||||| || |||||||| || |||||||| || |||| Sbjct 3334177 GCCATCTGGACAACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATA 3334236 Query 22343 TCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 ||| || || | || || | |||||||||| ||||| | ||||| || || Sbjct 3334237 TCTGCGGGGAT-GTTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTT 3334295 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || | || |||||| || ||| | || ||| || | || | |||| || || Sbjct 3334296 CATGGCGTCAGACCACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGAC 3334355 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || |||||||| | | ||| | ||||||||| || ||||||||| |||| || || | Sbjct 3334356 CTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCA 3334415 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 || ||||| |||| ||||| | || ||||| ||||| || || | || || Sbjct 3334416 CTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACT 3334475 Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATC 22638 ||| | | ||| ||| |||| ||| ||| || ||| | ||||||||| ||||| Sbjct 3334476 GTTGCGAATGCCATGCGCCTTGA---TTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATC 3334532 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698 ||| ||| ||||||| |||||| || | |||| | ||| || | || ||| Sbjct 3334533 GGAAGGCTTCACATT---CCACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGAGCC 3334589 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 |||||| || ||| || || | | |||||| || | || | ||| | Sbjct 3334590 TTCGTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGC 3334649 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGT 22814 | || || ||||| || || | |||||||| || || || ||| ||| Sbjct 3334650 ATGGTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGAC----TCGA 3334705 Query 22815 ACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874 | |||| || | | |||||| || || | |||||||||||| | ||| || || | Sbjct 3334706 AAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCC 3334765 Query 22875 GGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTC 22934 || || || | ||| || || | || || | || ||||| | Sbjct 3334766 TGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCT 3334825 Query 22935 TGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGC 22994 | |||||||||| |||| || || | | ||||| || || Sbjct 3334826 TATTCAAGTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGC 3334885 Query 22995 CCG-ATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCT 23051 | |||||| | ||||| | ||| | ||| || | ||||| ||||| |||| Sbjct 3334886 CTTCATTGTAGTCCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCT 3334945 Query 23052 CGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCA 23111 | || || |||||| | || || || || |||||| | || ||||| | Sbjct 3334946 CATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAA 3335005 Query 23112 AATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCG 23171 ||| |||||||||| || |||||||| | ||| |||||||||||| | || | || | Sbjct 3335006 GATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGG 3335065 Query 23172 TCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT 23231 | || ||| | ||| | ||| || ||| | |||| || | | ||| || Sbjct 3335066 TTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGATG-GTCTTGCGA 3335124 Query 23232 ACCTGCCTT--CTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTC 23289 ||| | |||| || ||||||| ||| | || || || ||| ||||||| ||||| Sbjct 3335125 CCCTTGTTGAGCTTC-TCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAGCAGTC 3335183 Query 23290 GGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTG-AGTCATTTTCAACGC 23348 ||||||||||| ||| | |||||||| ||| |||| || | || |||||||| | Sbjct 3335184 AGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCA-ATCGCCGTTCTTTTCAACAC 3335242 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 | |||| || ||||| || ||||| || ||| ||| || || || ||||| || || | Sbjct 3335243 GCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTT 3335302 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | ||||| ||||||| | |||| || || ||||||||||||||||| ||||| | Sbjct 3335303 CCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAA 3335362 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 |||| | || || ||||| || | ||| ||||| || ||||| || ||||| || |||| Sbjct 3335363 GGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGT 3335422 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 | ||| | |||| ||||| || | || ||||||||| | ||| |||||| | Sbjct 3335423 TATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGT 3335482 Query 23589 TCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATA 23648 ||||| | || || | ||| | || || || || || || || || || | Sbjct 3335483 ATGAACCGGTGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGA 3335542 Query 23649 TCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGA 23708 |||| || || || || |||||||| |||||||| |||||||| || || | ||| Sbjct 3335543 TCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGA 3335602 Query 23709 CCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768 | | ||| || ||||||| ||| || | || || | || ||| || || || || Sbjct 3335603 CTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGG 3335662 Query 23769 CGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCT 23828 | || || || | | ||||| | ||||| || || ||| | |||| | | Sbjct 3335663 CATGTGTGAAAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGT 3335722 Query 23829 CTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGC 23888 |||| ||||||| || || ||||| ||||||| || |||| ||| || | || Sbjct 3335723 CTCCCCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGC 3335782 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 | | || ||| | || || || | | | ||||| || || ||||| | ||||| | Sbjct 3335783 CATCAAGTTTAAGGAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGA 3335842 Query 23949 AGTCACGATCGTGCACTATGGCCGA 23973 |||| || || | ||| ||||| || Sbjct 3335843 AGTCTCGGTCATACACAATGGCGGA 3335867 >seq3 Length=2371949 Score = 120 bits (132), Expect = 3e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| |||||||||||||| ||||| || |||||| | || || ||| || Sbjct 2245472 GCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGTTG 2245413 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || ||||| ||||| || || || || ||||||| | || ||||| |||||| Sbjct 2245412 AAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGAGACGAG 2245353 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||||||||||||||||| || || || | | ||||||| Sbjct 2245352 GGTCTCCATACTGATTTCGCCTGTCTCCTATTCTCTCAC 2245314 >seq33 Length=3634720 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| |||||||| |||| ||||| | ||| Sbjct 1474474 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 1474415 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||| ||| | || || |||||| Sbjct 1474414 GATACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 1474355 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| |||||||| ||| | || | || || ||| Sbjct 1474354 CAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAAC 1474295 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || ||||| || || Sbjct 1474294 ATTCAGAAGGAGTCTACCCTCCATCTCGTCCT 1474263 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| || || ||||| || |||||| | || || || | || Sbjct 1474702 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 1474643 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| || || ||||||||| || | || || |||||| Sbjct 1474642 GATACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1474583 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | || || || | ||| || ||| Sbjct 1474582 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAAC 1474523 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| |||||||| |||| || |||| | || |||| Sbjct 1474522 ATCCAGAAGGAATCTACTCTTCACTTGGTTCTCCGACTCCGTGGTGGTA 1474474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766199405120